Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.03■□□□□ 0.8
CACNA1FO60840 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CACNA1FO60840 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CACNA1FO60840 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 AL442647.2-201ENST00000429864 857 ntBASIC20.03■□□□□ 0.8
CACNA1FO60840 DOC2GP-202ENST00000514950 1163 ntBASIC20.03■□□□□ 0.8
CACNA1FO60840 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC20.03■□□□□ 0.8
CACNA1FO60840 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CACNA1FO60840 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 PCDHA1-201ENST00000378133 2726 ntBASIC20.03■□□□□ 0.8
CACNA1FO60840 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 RN7SL399P-201ENST00000471648 279 ntBASIC20.03■□□□□ 0.8
CACNA1FO60840 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1FO60840 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.03■□□□□ 0.8
CACNA1FO60840 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.02■□□□□ 0.8
CACNA1FO60840 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CACNA1FO60840 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
CACNA1FO60840 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
CACNA1FO60840 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CACNA1FO60840 AC104457.1-201ENST00000401024 814 ntBASIC20.02■□□□□ 0.8
CACNA1FO60840 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.02■□□□□ 0.8
CACNA1FO60840 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.02■□□□□ 0.8
CACNA1FO60840 TP53TG3HP-202ENST00000569755 579 ntBASIC20.02■□□□□ 0.8
CACNA1FO60840 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC20.02■□□□□ 0.8
CACNA1FO60840 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CACNA1FO60840 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.02■□□□□ 0.79
CACNA1FO60840 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CACNA1FO60840 AC009090.5-201ENST00000624886 2285 ntBASIC20.01■□□□□ 0.79
CACNA1FO60840 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.01■□□□□ 0.79
CACNA1FO60840 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.01■□□□□ 0.79
CACNA1FO60840 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CACNA1FO60840 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC20.01■□□□□ 0.79
CACNA1FO60840 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CACNA1FO60840 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.01■□□□□ 0.79
CACNA1FO60840 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.01■□□□□ 0.79
CACNA1FO60840 AC123567.1-201ENST00000548294 1261 ntBASIC20.01■□□□□ 0.79
CACNA1FO60840 AC005225.4-201ENST00000557330 545 ntBASIC20.01■□□□□ 0.79
CACNA1FO60840 AC027307.3-201ENST00000594262 1100 ntBASIC20.01■□□□□ 0.79
CACNA1FO60840 TMEM261P1-201ENST00000604899 340 ntBASIC20.01■□□□□ 0.79
CACNA1FO60840 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC20.01■□□□□ 0.79
CACNA1FO60840 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CACNA1FO60840 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CACNA1FO60840 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20■□□□□ 0.79
CACNA1FO60840 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20■□□□□ 0.79
CACNA1FO60840 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
CACNA1FO60840 USP32P1-208ENST00000506594 1164 ntBASIC20■□□□□ 0.79
CACNA1FO60840 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CACNA1FO60840 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms