Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC22.59■■□□□ 1.21
MSH5O43196 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
MSH5O43196 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MSH5O43196 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
MSH5O43196 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
MSH5O43196 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 BCAR1-209ENST00000546196 1340 ntBASIC22.58■■□□□ 1.21
MSH5O43196 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
MSH5O43196 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC22.58■■□□□ 1.21
MSH5O43196 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
MSH5O43196 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC22.58■■□□□ 1.21
MSH5O43196 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 VN1R66P-201ENST00000412929 916 ntBASIC22.58■■□□□ 1.21
MSH5O43196 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC22.58■■□□□ 1.21
MSH5O43196 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC22.58■■□□□ 1.21
MSH5O43196 AC079385.2-201ENST00000547531 863 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 AC007216.2-201ENST00000562802 384 ntTSL 3 BASIC22.58■■□□□ 1.21
MSH5O43196 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC22.58■■□□□ 1.21
MSH5O43196 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC22.58■■□□□ 1.21
MSH5O43196 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC22.58■■□□□ 1.21
MSH5O43196 AP000553.2-201ENST00000609038 441 ntBASIC22.58■■□□□ 1.21
MSH5O43196 AC073592.5-201ENST00000624854 528 ntBASIC22.58■■□□□ 1.21
MSH5O43196 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MSH5O43196 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC22.58■■□□□ 1.2
MSH5O43196 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.2
MSH5O43196 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
MSH5O43196 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH5O43196 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH5O43196 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 LINC01763-201ENST00000425185 1547 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH5O43196 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
MSH5O43196 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 AC026691.1-201ENST00000602502 2017 ntBASIC22.57■■□□□ 1.2
MSH5O43196 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC22.57■■□□□ 1.2
MSH5O43196 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 CNTRL-202ENST00000373844 713 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH5O43196 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH5O43196 BMI1P1-201ENST00000445879 941 ntBASIC22.57■■□□□ 1.2
MSH5O43196 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 AC025171.2-201ENST00000451894 1218 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 TPRKBP1-201ENST00000456243 481 ntBASIC22.57■■□□□ 1.2
MSH5O43196 SMIM19-205ENST00000490331 487 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 RPS15P9-201ENST00000494093 319 ntBASIC22.57■■□□□ 1.2
MSH5O43196 LINC01096-201ENST00000501050 1263 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 SMN2-210ENST00000511812 867 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 AP000344.2-201ENST00000512987 629 ntBASIC22.57■■□□□ 1.2
MSH5O43196 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH5O43196 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH5O43196 AL450472.2-201ENST00000603663 1156 ntBASIC22.57■■□□□ 1.2
MSH5O43196 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC22.57■■□□□ 1.2
MSH5O43196 AC079766.1-201ENST00000608774 427 ntBASIC22.57■■□□□ 1.2
MSH5O43196 AL391834.2-201ENST00000609982 546 ntBASIC22.57■■□□□ 1.2
MSH5O43196 AD001527.2-201ENST00000622994 785 ntBASIC22.57■■□□□ 1.2
MSH5O43196 AL627171.2-201ENST00000635177 1090 ntTSL 5 BASIC22.57■■□□□ 1.2
MSH5O43196 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
MSH5O43196 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH5O43196 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC22.57■■□□□ 1.2
MSH5O43196 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
MSH5O43196 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
MSH5O43196 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 COX16-201ENST00000389912 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
MSH5O43196 SIGLEC16-201ENST00000599858 1437 ntBASIC22.57■■□□□ 1.2
MSH5O43196 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH5O43196 MYB-201ENST00000316528 3571 ntTSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms