Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 LINC02228-204ENST00000642115 2962 ntBASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC11.33□□□□□ -0.6
UBE2D4Q9Y2X8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 FAM45BP-202ENST00000592932 1624 ntBASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 AC012569.1-201ENST00000591191 1524 ntBASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 HAUS4P1-201ENST00000406739 1145 ntBASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 GSN-206ENST00000394353 2311 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC11.32□□□□□ -0.6
UBE2D4Q9Y2X8 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 LAGE3P1-201ENST00000425356 484 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 FGFR3P6-201ENST00000457012 610 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 SCARNA2-201ENST00000458748 420 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 RPS15P9-201ENST00000494093 319 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 MTRF1LP2-201ENST00000506027 1122 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 FOSL1P1-201ENST00000511041 816 ntBASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 NMU-205ENST00000511469 756 ntTSL 3 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBE2D4Q9Y2X8 AC021097.1-201ENST00000607902 574 ntBASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms