Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AC068587.6-202ENST00000641839 5619 ntBASIC14.86□□□□□ -0.03
LRFN1Q9P244 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AC106886.4-201ENST00000623557 2502 ntBASIC14.86□□□□□ -0.03
LRFN1Q9P244 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AC015922.1-201ENST00000421102 1152 ntBASIC14.86□□□□□ -0.03
LRFN1Q9P244 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.86□□□□□ -0.03
LRFN1Q9P244 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AC009407.1-201ENST00000568958 598 ntBASIC14.86□□□□□ -0.03
LRFN1Q9P244 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.86□□□□□ -0.03
LRFN1Q9P244 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRFN1Q9P244 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PIN1P1-201ENST00000412108 996 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 MIR4321-201ENST00000592276 80 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 AF228730.6-201ENST00000641497 218 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 AC084121.3-201ENST00000641716 218 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 AC105233.6-201ENST00000642093 218 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 AC080080.1-201ENST00000625121 2420 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LRFN1Q9P244 KRT8P12-202ENST00000472924 1397 ntBASIC14.85□□□□□ -0.03
LRFN1Q9P244 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRFN1Q9P244 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms