Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CNTN3Q9P232 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CNTN3Q9P232 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 KRT8P37-201ENST00000451609 1420 ntBASIC17.34■□□□□ 0.37
CNTN3Q9P232 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 BNIP3P1-202ENST00000550043 1585 ntBASIC17.34■□□□□ 0.37
CNTN3Q9P232 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.34■□□□□ 0.37
CNTN3Q9P232 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 AL162727.3-201ENST00000635661 2787 ntBASIC17.34■□□□□ 0.37
CNTN3Q9P232 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTN3Q9P232 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 MTHFR-217ENST00000641820 1569 ntBASIC17.33■□□□□ 0.37
CNTN3Q9P232 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.33■□□□□ 0.37
CNTN3Q9P232 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTN3Q9P232 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CNTN3Q9P232 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 COX20P2-201ENST00000452636 358 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 AC025048.3-201ENST00000590609 569 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 AC005702.4-201ENST00000618393 416 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.33■□□□□ 0.36
CNTN3Q9P232 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.33■□□□□ 0.36
CNTN3Q9P232 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTN3Q9P232 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms