Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 LY6E-208ENST00000520531 490 ntTSL 2 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 AC013355.1-201ENST00000562625 723 ntBASIC26.16■■□□□ 1.78
IFT140Q96RY7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 AL138799.1-201ENST00000448213 1675 ntBASIC26.15■■□□□ 1.78
IFT140Q96RY7 TK1-203ENST00000588734 1681 ntTSL 2 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 RN7SL181P-201ENST00000462921 277 ntBASIC26.15■■□□□ 1.78
IFT140Q96RY7 OARD1-204ENST00000464633 717 ntTSL 2 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 AP003171.2-201ENST00000528208 925 ntBASIC26.15■■□□□ 1.78
IFT140Q96RY7 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 MIR6756-201ENST00000616240 63 ntBASIC26.15■■□□□ 1.78
IFT140Q96RY7 AC011491.1-203ENST00000637688 543 ntBASIC26.15■■□□□ 1.78
IFT140Q96RY7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
IFT140Q96RY7 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC26.15■■□□□ 1.78
IFT140Q96RY7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
IFT140Q96RY7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
IFT140Q96RY7 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
IFT140Q96RY7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
IFT140Q96RY7 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 PPY2P-201ENST00000582808 702 ntBASIC26.14■■□□□ 1.78
IFT140Q96RY7 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
IFT140Q96RY7 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC26.14■■□□□ 1.78
IFT140Q96RY7 RN7SL736P-201ENST00000613111 269 ntBASIC26.14■■□□□ 1.78
IFT140Q96RY7 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
IFT140Q96RY7 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
IFT140Q96RY7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
IFT140Q96RY7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC26.14■■□□□ 1.77
IFT140Q96RY7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
IFT140Q96RY7 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC26.13■■□□□ 1.77
IFT140Q96RY7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 HLA-A-202ENST00000376806 1854 ntBASIC26.13■■□□□ 1.77
IFT140Q96RY7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
IFT140Q96RY7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC26.13■■□□□ 1.77
IFT140Q96RY7 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
IFT140Q96RY7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC26.13■■□□□ 1.77
IFT140Q96RY7 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 B9D1-203ENST00000395615 805 ntTSL 3 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 Z97180.1-201ENST00000445173 988 ntBASIC26.12■■□□□ 1.77
IFT140Q96RY7 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 TBCB-211ENST00000589996 724 ntTSL 3 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 AC073413.1-201ENST00000603927 732 ntBASIC26.12■■□□□ 1.77
IFT140Q96RY7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 AC004408.2-201ENST00000623613 2777 ntBASIC26.12■■□□□ 1.77
IFT140Q96RY7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
IFT140Q96RY7 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
IFT140Q96RY7 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
IFT140Q96RY7 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC26.11■■□□□ 1.77
IFT140Q96RY7 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC26.11■■□□□ 1.77
IFT140Q96RY7 AL596276.2-201ENST00000447525 331 ntBASIC26.11■■□□□ 1.77
IFT140Q96RY7 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC26.11■■□□□ 1.77
IFT140Q96RY7 AC073352.2-201ENST00000609385 439 ntBASIC26.11■■□□□ 1.77
IFT140Q96RY7 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC26.11■■□□□ 1.77
IFT140Q96RY7 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC26.11■■□□□ 1.77
IFT140Q96RY7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
IFT140Q96RY7 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC26.11■■□□□ 1.77
IFT140Q96RY7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms