Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ANKRD19P-201ENST00000338192 862 ntBASIC19.97■□□□□ 0.79
SYNE4Q8N205 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.97■□□□□ 0.79
SYNE4Q8N205 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 RRP7BP-205ENST00000566851 833 ntBASIC19.97■□□□□ 0.79
SYNE4Q8N205 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SYNE4Q8N205 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE4Q8N205 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE4Q8N205 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SYNE4Q8N205 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.95■□□□□ 0.79
SYNE4Q8N205 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 PCDHA12-202ENST00000613593 2588 ntBASIC19.95■□□□□ 0.78
SYNE4Q8N205 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 AC104989.1-201ENST00000519711 778 ntBASIC19.95■□□□□ 0.78
SYNE4Q8N205 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 AC243562.2-201ENST00000561247 970 ntBASIC19.95■□□□□ 0.78
SYNE4Q8N205 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE4Q8N205 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE4Q8N205 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms