Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
NUDCD3Q8IVD9 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 SART3-203ENST00000546611 1184 ntBASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 AL160237.2-201ENST00000556165 472 ntBASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 AC087388.1-201ENST00000571370 1112 ntBASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 AL732292.2-201ENST00000609649 430 ntBASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 AP000550.4-202ENST00000639755 178 ntBASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
NUDCD3Q8IVD9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 ELK2BP-201ENST00000415014 1224 ntBASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 ATP5G2P1-201ENST00000433580 426 ntBASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 GGTLC5P-201ENST00000617623 998 ntBASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 AL355877.3-201ENST00000622820 899 ntBASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 AL109954.1-202ENST00000564051 2148 ntBASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
NUDCD3Q8IVD9 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.14■□□□□ 0.18
NUDCD3Q8IVD9 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NUDCD3Q8IVD9 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms