Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 DRD5P1-201ENST00000456605 1438 ntBASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TEX30-203ENST00000376022 828 ntTSL 2 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 BTBD6P1-201ENST00000412176 1267 ntBASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 HNRNPA1P48-202ENST00000565308 961 ntBASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 KSR1-207ENST00000578981 748 ntTSL 4 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
KRT28Q7Z3Y7 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.58■■□□□ 1.04
KRT28Q7Z3Y7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
KRT28Q7Z3Y7 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
KRT28Q7Z3Y7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.58■■□□□ 1.04
KRT28Q7Z3Y7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AC136604.1-201ENST00000418535 575 ntBASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AC079328.1-201ENST00000560358 952 ntBASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 COG4-212ENST00000564653 590 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AC244452.3-201ENST00000636814 210 ntBASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 AC068880.1-201ENST00000507289 2297 ntBASIC21.57■■□□□ 1.04
KRT28Q7Z3Y7 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 AL121723.1-201ENST00000445194 1519 ntBASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 RPS3-201ENST00000278572 907 ntTSL 3 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 MIR4741-201ENST00000579822 90 ntBASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 PCDHB18P-201ENST00000524813 2368 ntBASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT28Q7Z3Y7 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms