Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
KRT39Q6A163 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.48■□□□□ 0.39
KRT39Q6A163 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 AC023141.5-201ENST00000458585 616 ntBASIC17.48■□□□□ 0.39
KRT39Q6A163 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.48■□□□□ 0.39
KRT39Q6A163 ALG1L8P-201ENST00000533887 760 ntBASIC17.48■□□□□ 0.39
KRT39Q6A163 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.48■□□□□ 0.39
KRT39Q6A163 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.48■□□□□ 0.39
KRT39Q6A163 AC009093.7-201ENST00000623853 1223 ntBASIC17.48■□□□□ 0.39
KRT39Q6A163 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.48■□□□□ 0.39
KRT39Q6A163 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.48■□□□□ 0.39
KRT39Q6A163 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
KRT39Q6A163 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
KRT39Q6A163 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.48■□□□□ 0.39
KRT39Q6A163 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
KRT39Q6A163 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
KRT39Q6A163 MIR1233-2-201ENST00000408138 82 ntBASIC17.47■□□□□ 0.39
KRT39Q6A163 MIR1233-1-201ENST00000408722 82 ntBASIC17.47■□□□□ 0.39
KRT39Q6A163 CNN2P11-201ENST00000429351 262 ntBASIC17.47■□□□□ 0.39
KRT39Q6A163 GPS2P2-201ENST00000430745 888 ntBASIC17.47■□□□□ 0.39
KRT39Q6A163 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
KRT39Q6A163 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.47■□□□□ 0.39
KRT39Q6A163 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
KRT39Q6A163 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
KRT39Q6A163 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.47■□□□□ 0.39
KRT39Q6A163 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.47■□□□□ 0.39
KRT39Q6A163 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
KRT39Q6A163 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.46■□□□□ 0.39
KRT39Q6A163 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
KRT39Q6A163 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
KRT39Q6A163 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
KRT39Q6A163 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.46■□□□□ 0.39
KRT39Q6A163 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms