Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.22□□□□□ -0.13
TFF3Q07654 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.22□□□□□ -0.13
TFF3Q07654 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 AC106886.4-201ENST00000623557 2502 ntBASIC14.21□□□□□ -0.13
TFF3Q07654 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
TFF3Q07654 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
TFF3Q07654 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.21□□□□□ -0.13
TFF3Q07654 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
TFF3Q07654 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.21□□□□□ -0.13
TFF3Q07654 AC098850.1-201ENST00000419919 790 ntBASIC14.21□□□□□ -0.13
TFF3Q07654 TTTY23B-201ENST00000442790 549 ntBASIC14.21□□□□□ -0.13
TFF3Q07654 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 AC123567.1-201ENST00000548294 1261 ntBASIC14.21□□□□□ -0.13
TFF3Q07654 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.21□□□□□ -0.13
TFF3Q07654 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.21□□□□□ -0.13
TFF3Q07654 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.21□□□□□ -0.13
TFF3Q07654 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.21□□□□□ -0.13
TFF3Q07654 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.21□□□□□ -0.13
TFF3Q07654 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.21□□□□□ -0.13
TFF3Q07654 AC020765.3-201ENST00000613051 740 ntBASIC14.21□□□□□ -0.13
TFF3Q07654 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.21□□□□□ -0.13
TFF3Q07654 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TFF3Q07654 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
TFF3Q07654 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC14.21□□□□□ -0.14
TFF3Q07654 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
TFF3Q07654 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TFF3Q07654 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
TFF3Q07654 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.21□□□□□ -0.14
TFF3Q07654 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
TFF3Q07654 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TFF3Q07654 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
TFF3Q07654 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
TFF3Q07654 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
TFF3Q07654 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TFF3Q07654 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.21□□□□□ -0.14
TFF3Q07654 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
TFF3Q07654 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
TFF3Q07654 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.2□□□□□ -0.14
TFF3Q07654 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
TFF3Q07654 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
TFF3Q07654 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
TFF3Q07654 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
TFF3Q07654 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.2□□□□□ -0.14
TFF3Q07654 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.2□□□□□ -0.14
TFF3Q07654 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 AC092337.1-201ENST00000568699 1129 ntBASIC14.2□□□□□ -0.14
TFF3Q07654 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.2□□□□□ -0.14
TFF3Q07654 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TFF3Q07654 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
TFF3Q07654 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.2□□□□□ -0.14
TFF3Q07654 AC093726.1-201ENST00000608064 963 ntBASIC14.2□□□□□ -0.14
TFF3Q07654 MIR6069-201ENST00000620069 79 ntBASIC14.2□□□□□ -0.14
TFF3Q07654 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.2□□□□□ -0.14
TFF3Q07654 PCDHB19P-201ENST00000570871 2371 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms