Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.49■□□□□ 0.55
SMARCA1P28370 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.49■□□□□ 0.55
SMARCA1P28370 AL450472.2-201ENST00000603663 1156 ntBASIC18.49■□□□□ 0.55
SMARCA1P28370 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 AC026691.1-201ENST00000602502 2017 ntBASIC18.49■□□□□ 0.55
SMARCA1P28370 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMARCA1P28370 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.49■□□□□ 0.55
SMARCA1P28370 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AL391005.1-201ENST00000623953 2435 ntBASIC18.48■□□□□ 0.55
SMARCA1P28370 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.48■□□□□ 0.55
SMARCA1P28370 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.48■□□□□ 0.55
SMARCA1P28370 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.48■□□□□ 0.55
SMARCA1P28370 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AC025048.3-201ENST00000590609 569 ntBASIC18.48■□□□□ 0.55
SMARCA1P28370 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.48■□□□□ 0.55
SMARCA1P28370 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.48■□□□□ 0.55
SMARCA1P28370 AC005702.4-201ENST00000618393 416 ntBASIC18.48■□□□□ 0.55
SMARCA1P28370 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SMARCA1P28370 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.48■□□□□ 0.55
SMARCA1P28370 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
SMARCA1P28370 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMARCA1P28370 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SMARCA1P28370 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 AC114501.2-201ENST00000439631 535 ntBASIC18.47■□□□□ 0.55
SMARCA1P28370 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCA1P28370 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCA1P28370 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.47■□□□□ 0.55
SMARCA1P28370 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.47■□□□□ 0.55
SMARCA1P28370 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCA1P28370 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.47■□□□□ 0.55
SMARCA1P28370 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SMARCA1P28370 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMARCA1P28370 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
SMARCA1P28370 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMARCA1P28370 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.47■□□□□ 0.55
SMARCA1P28370 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.46■□□□□ 0.55
SMARCA1P28370 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMARCA1P28370 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms