Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.04■□□□□ 0.32
BDNFP23560 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BDNFP23560 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.03■□□□□ 0.32
BDNFP23560 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
BDNFP23560 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
BDNFP23560 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.03■□□□□ 0.32
BDNFP23560 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
BDNFP23560 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.03■□□□□ 0.32
BDNFP23560 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.03■□□□□ 0.32
BDNFP23560 AC245100.5-201ENST00000452108 331 ntBASIC17.03■□□□□ 0.32
BDNFP23560 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.03■□□□□ 0.32
BDNFP23560 LINC02560-201ENST00000596379 459 ntBASIC17.03■□□□□ 0.32
BDNFP23560 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.03■□□□□ 0.32
BDNFP23560 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.03■□□□□ 0.32
BDNFP23560 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.03■□□□□ 0.32
BDNFP23560 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.03■□□□□ 0.32
BDNFP23560 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 AL691432.1-201ENST00000596308 1422 ntBASIC17.03■□□□□ 0.32
BDNFP23560 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.03■□□□□ 0.32
BDNFP23560 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BDNFP23560 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.03■□□□□ 0.32
BDNFP23560 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
BDNFP23560 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 RN7SL618P-201ENST00000477850 296 ntBASIC17.02■□□□□ 0.32
BDNFP23560 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
BDNFP23560 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.02■□□□□ 0.32
BDNFP23560 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.02■□□□□ 0.32
BDNFP23560 AC010336.2-201ENST00000564226 506 ntBASIC17.02■□□□□ 0.32
BDNFP23560 AC008738.7-201ENST00000609744 511 ntBASIC17.02■□□□□ 0.32
BDNFP23560 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.02■□□□□ 0.31
BDNFP23560 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BDNFP23560 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BDNFP23560 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BDNFP23560 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
BDNFP23560 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
BDNFP23560 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
BDNFP23560 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
BDNFP23560 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.02■□□□□ 0.31
BDNFP23560 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.01■□□□□ 0.31
BDNFP23560 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
BDNFP23560 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.01■□□□□ 0.31
BDNFP23560 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BDNFP23560 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms