Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.17■□□□□ 0.18
MSH3P20585 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.17■□□□□ 0.18
MSH3P20585 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
MSH3P20585 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
MSH3P20585 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.16■□□□□ 0.18
MSH3P20585 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
MSH3P20585 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.16■□□□□ 0.18
MSH3P20585 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.16■□□□□ 0.18
MSH3P20585 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 AL592424.1-201ENST00000563624 1536 ntBASIC16.16■□□□□ 0.18
MSH3P20585 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.16■□□□□ 0.18
MSH3P20585 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.16■□□□□ 0.18
MSH3P20585 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.16■□□□□ 0.18
MSH3P20585 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.16■□□□□ 0.18
MSH3P20585 AC084121.4-201ENST00000641598 221 ntBASIC16.16■□□□□ 0.18
MSH3P20585 AF228730.8-201ENST00000642140 221 ntBASIC16.16■□□□□ 0.18
MSH3P20585 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
MSH3P20585 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MSH3P20585 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSH3P20585 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 FOXO1B-201ENST00000504678 1527 ntBASIC16.15■□□□□ 0.18
MSH3P20585 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 FAM58DP-201ENST00000428076 619 ntBASIC16.15■□□□□ 0.18
MSH3P20585 RBPMS2P1-201ENST00000437762 623 ntBASIC16.15■□□□□ 0.18
MSH3P20585 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.15■□□□□ 0.18
MSH3P20585 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 RNA5SP410-201ENST00000516285 106 ntBASIC16.15■□□□□ 0.18
MSH3P20585 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.15■□□□□ 0.18
MSH3P20585 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
MSH3P20585 AC024267.1-201ENST00000582320 895 ntBASIC16.15■□□□□ 0.18
MSH3P20585 AL365330.1-201ENST00000607459 531 ntBASIC16.15■□□□□ 0.18
MSH3P20585 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 AC009093.7-201ENST00000623853 1223 ntBASIC16.15■□□□□ 0.18
MSH3P20585 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 AL513477.1-201ENST00000602865 2407 ntBASIC16.15■□□□□ 0.18
MSH3P20585 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.15■□□□□ 0.18
MSH3P20585 AC006449.6-201ENST00000612330 2296 ntBASIC16.15■□□□□ 0.18
MSH3P20585 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.15■□□□□ 0.18
MSH3P20585 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSH3P20585 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms