Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 CDC14C-201ENST00000428251 1719 ntBASIC16.65■□□□□ 0.26
HMGA1P17096 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HMGA1P17096 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGA1P17096 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HMGA1P17096 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGA1P17096 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 AC011495.1-201ENST00000498085 584 ntBASIC16.65■□□□□ 0.26
HMGA1P17096 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 WFDC1-204ENST00000613603 549 ntBASIC16.65■□□□□ 0.26
HMGA1P17096 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HMGA1P17096 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HMGA1P17096 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGA1P17096 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
HMGA1P17096 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HMGA1P17096 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 AC136604.1-201ENST00000418535 575 ntBASIC16.64■□□□□ 0.25
HMGA1P17096 KRT18P64-201ENST00000434946 1219 ntBASIC16.64■□□□□ 0.25
HMGA1P17096 RN7SL837P-201ENST00000463010 287 ntBASIC16.64■□□□□ 0.25
HMGA1P17096 RN7SL399P-201ENST00000471648 279 ntBASIC16.64■□□□□ 0.25
HMGA1P17096 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.64■□□□□ 0.25
HMGA1P17096 HNRNPUP1-201ENST00000554987 333 ntBASIC16.64■□□□□ 0.25
HMGA1P17096 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGA1P17096 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGA1P17096 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
HMGA1P17096 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGA1P17096 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGA1P17096 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGA1P17096 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 PCDHA14-201ENST00000506751 2298 ntBASIC16.63■□□□□ 0.25
HMGA1P17096 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGA1P17096 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGA1P17096 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGA1P17096 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms