Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 LARS2-203ENST00000415258 4744 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.776e-6■□□□□ 10.9
YBX3P16989 LARS2-201ENST00000265537 4281 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.86e-6■□□□□ 10.9
YBX3P16989 RALGDS-204ENST00000393157 3689 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.816e-6■□□□□ 10.9
YBX3P16989 C4orf46-201ENST00000379205 3521 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.836e-6■□□□□ 10.9
YBX3P16989 NOP56-211ENST00000471023 592 ntTSL 29.8□□□□□ -0.846e-6■□□□□ 10.9
YBX3P16989 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC9.65□□□□□ -0.866e-6■□□□□ 10.9
YBX3P16989 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.946e-6■□□□□ 10.9
YBX3P16989 C4orf46-202ENST00000508457 3358 ntTSL 5 BASIC8.86□□□□□ -0.996e-6■□□□□ 10.9
YBX3P16989 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.026e-6■□□□□ 10.9
YBX3P16989 NOP56-212ENST00000480447 651 ntTSL 28.53□□□□□ -1.046e-6■□□□□ 10.9
YBX3P16989 SLMAP-214ENST00000467901 2698 ntTSL 28.21□□□□□ -1.096e-6■□□□□ 10.9
YBX3P16989 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC8□□□□□ -1.136e-6■□□□□ 10.9
YBX3P16989 TTC7B-207ENST00000555239 591 ntTSL 38□□□□□ -1.136e-6■□□□□ 10.9
YBX3P16989 NOL9-204ENST00000464383 835 ntTSL 57.73□□□□□ -1.176e-6■□□□□ 10.9
YBX3P16989 LYN-201ENST00000420292 561 ntTSL 37.43□□□□□ -1.226e-6■□□□□ 10.9
YBX3P16989 NMD3-209ENST00000478160 606 ntTSL 37.18□□□□□ -1.266e-6■□□□□ 10.9
YBX3P16989 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.99□□□□□ -1.296e-6■□□□□ 10.9
YBX3P16989 NLN-206ENST00000507201 617 ntTSL 56.72□□□□□ -1.336e-6■□□□□ 10.9
YBX3P16989 NOL9-203ENST00000462798 638 ntTSL 26.52□□□□□ -1.376e-6■□□□□ 10.9
YBX3P16989 EP300-211ENST00000635691 402 ntTSL 36.39□□□□□ -1.396e-6■□□□□ 10.9
YBX3P16989 CHD8-212ENST00000557329 578 ntTSL 26.39□□□□□ -1.396e-6■□□□□ 10.9
YBX3P16989 TSG101-207ENST00000543054 593 ntTSL 26.25□□□□□ -1.416e-6■□□□□ 10.9
YBX3P16989 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.2□□□□□ -1.426e-6■□□□□ 10.9
YBX3P16989 NR3C1-211ENST00000504336 611 ntTSL 25.98□□□□□ -1.456e-6■□□□□ 10.9
YBX3P16989 MYO19-222ENST00000620644 565 ntTSL 45.86□□□□□ -1.476e-6■□□□□ 10.9
YBX3P16989 TSG101-206ENST00000542488 304 ntTSL 54.47□□□□□ -1.696e-6■□□□□ 10.9
YBX3P16989 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.13□□□□□ -1.756e-6■□□□□ 10.9
YBX3P16989 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.786e-6■□□□□ 10.9
YBX3P16989 SLC25A5-203ENST00000463551 433 ntTSL 27.64□□□□□ -1.196e-25■□□□□ 10.9
YBX3P16989 GPI-206ENST00000587384 810 ntTSL 323.13■■□□□ 1.294e-31■□□□□ 10.9
YBX3P16989 GPI-207ENST00000587521 557 ntTSL 515.75■□□□□ 0.114e-31■□□□□ 10.9
YBX3P16989 TROVE2-203ENST00000367444 1857 ntTSL 1 (best) BASIC14.56□□□□□ -0.084e-7■□□□□ 10.9
YBX3P16989 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.95□□□□□ -0.344e-7■□□□□ 10.9
YBX3P16989 TROVE2-202ENST00000367443 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC10.6□□□□□ -0.714e-7■□□□□ 10.9
YBX3P16989 TROVE2-204ENST00000367445 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.734e-7■□□□□ 10.9
YBX3P16989 HDLBP-239ENST00000483086 620 ntTSL 316.22■□□□□ 0.196e-10■□□□□ 10.9
YBX3P16989 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.453e-8■□□□□ 10.9
YBX3P16989 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC23.02■■□□□ 1.283e-8■□□□□ 10.9
YBX3P16989 TIMM17B-206ENST00000472645 804 ntTSL 322.63■■□□□ 1.213e-8■□□□□ 10.9
YBX3P16989 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC22.03■■□□□ 1.123e-8■□□□□ 10.9
YBX3P16989 TIMM17B-205ENST00000466995 1528 ntTSL 218.99■□□□□ 0.633e-8■□□□□ 10.9
YBX3P16989 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC18.37■□□□□ 0.533e-8■□□□□ 10.9
YBX3P16989 ATAD2-202ENST00000517666 4995 ntTSL 512.43□□□□□ -0.422e-6■□□□□ 10.9
YBX3P16989 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.422e-6■□□□□ 10.9
YBX3P16989 ATAD2-205ENST00000521903 5143 ntTSL 1 (best) BASIC9.05□□□□□ -0.962e-6■□□□□ 10.9
YBX3P16989 ATAD2-203ENST00000519124 4650 ntTSL 1 (best)6.68□□□□□ -1.342e-6■□□□□ 10.9
YBX3P16989 NUCB2-208ENST00000529010 2274 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.739e-7■□□□□ 10.9
YBX3P16989 NUCB2-217ENST00000533773 1839 ntTSL 54.84□□□□□ -1.639e-7■□□□□ 10.9
YBX3P16989 ECH1-203ENST00000594391 919 ntTSL 522.64■■□□□ 1.212e-9■□□□□ 10.9
YBX3P16989 SSR3-201ENST00000265044 3716 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.765e-9■□□□□ 10.9
YBX3P16989 ANP32B-202ENST00000473205 687 ntTSL 317.37■□□□□ 0.374e-35■□□□□ 10.9
YBX3P16989 FKBP4-207ENST00000544366 287 ntTSL 35.14□□□□□ -1.592e-11■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC27.76■■■□□ 2.033e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC25.59■■□□□ 1.693e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-224ENST00000581718 574 ntTSL 224.86■■□□□ 1.573e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC24.56■■□□□ 1.523e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-203ENST00000472367 794 ntTSL 323.52■■□□□ 1.363e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-212ENST00000483588 688 ntTSL 322.2■■□□□ 1.143e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-229ENST00000584177 574 ntTSL 421.88■■□□□ 1.093e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.52■□□□□ 0.563e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.52■□□□□ 0.563e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC18.05■□□□□ 0.483e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-215ENST00000491009 863 ntTSL 217.74■□□□□ 0.433e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.65■□□□□ 0.423e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-206ENST00000477249 891 ntTSL 517.5■□□□□ 0.393e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC16.89■□□□□ 0.293e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-217ENST00000497774 1662 ntTSL 515.8■□□□□ 0.123e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-227ENST00000583400 712 ntTSL 414.53□□□□□ -0.083e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-207ENST00000478103 712 ntTSL 314.08□□□□□ -0.163e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-222ENST00000580770 572 ntTSL 413.88□□□□□ -0.193e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-201ENST00000460249 773 ntTSL 313.88□□□□□ -0.193e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-204ENST00000475947 598 ntTSL 213.88□□□□□ -0.193e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC13.01□□□□□ -0.333e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-221ENST00000580180 753 ntTSL 212.73□□□□□ -0.373e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-230ENST00000584926 604 ntTSL 511.24□□□□□ -0.613e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)11.24□□□□□ -0.613e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC11.14□□□□□ -0.633e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-216ENST00000492250 565 ntTSL 58.08□□□□□ -1.123e-42■□□□□ 10.9
YBX3P16989 LRRC75A-AS1-211ENST00000483140 936 ntTSL 25.45□□□□□ -1.543e-42■□□□□ 10.9
YBX3P16989 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.64■■□□□ 1.537e-7■□□□□ 10.9
YBX3P16989 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23.81■■□□□ 1.47e-7■□□□□ 10.9
YBX3P16989 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.177e-7■□□□□ 10.9
YBX3P16989 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.09■□□□□ 0.657e-7■□□□□ 10.9
YBX3P16989 PSMB3-210ENST00000618159 562 ntTSL 213.39□□□□□ -0.272e-9■□□□□ 10.9
YBX3P16989 SLC25A23-213ENST00000601760 271 ntTSL 1 (best)12.57□□□□□ -0.44e-6■□□□□ 10.9
YBX3P16989 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.762e-6■□□□□ 10.9
YBX3P16989 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.082e-6■□□□□ 10.9
YBX3P16989 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)15.28■□□□□ 0.042e-6■□□□□ 10.9
YBX3P16989 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC24.71■■□□□ 1.551e-6■□□□□ 10.9
YBX3P16989 WBP2-205ENST00000586257 676 ntTSL 323.58■■□□□ 1.371e-6■□□□□ 10.9
YBX3P16989 WBP2-203ENST00000433525 928 ntTSL 2 BASIC23.1■■□□□ 1.291e-6■□□□□ 10.9
YBX3P16989 WBP2-208ENST00000588373 1374 ntTSL 222.4■■□□□ 1.181e-6■□□□□ 10.9
YBX3P16989 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.34■□□□□ 0.851e-6■□□□□ 10.9
YBX3P16989 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.22■□□□□ 0.671e-6■□□□□ 10.9
YBX3P16989 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.591e-6■□□□□ 10.9
YBX3P16989 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.461e-6■□□□□ 10.9
YBX3P16989 WBP2-216ENST00000591831 1406 ntTSL 516.21■□□□□ 0.191e-6■□□□□ 10.9
YBX3P16989 WBP2-207ENST00000587642 3718 ntTSL 210.03□□□□□ -0.81e-6■□□□□ 10.9
YBX3P16989 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC8.11□□□□□ -1.116e-12■□□□□ 10.9
YBX3P16989 RPS3A-211ENST00000512797 686 ntTSL 27.95□□□□□ -1.146e-12■□□□□ 10.9
Retrieved 100 of 29,075 protein–RNA pairs in 174.8 ms