RNA–Protein interactions for RNA: ENST00000557329.1

CHD8-212, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 2

Gene CHD8, Length 578 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-212ENST00000557329 AEBP2Q6ZN18 517 aaPredicted RBP22.71■■□□□ 1.23
CHD8-212ENST00000557329 CHIC1Q5VXU3 224 aa21.41■■□□□ 1.02
CHD8-212ENST00000557329 SENP3Q9H4L4 574 aaPredicted RBP19.45■□□□□ 0.7
CHD8-212ENST00000557329 PHF23Q9BUL5 403 aaPredicted RBP19.14■□□□□ 0.65
CHD8-212ENST00000557329 FOXD1Q16676 465 aa18.12■□□□□ 0.49
CHD8-212ENST00000557329 MSH5O43196 834 aa17.08■□□□□ 0.32
CHD8-212ENST00000557329 PLPPR3Q6T4P5 718 aa17.02■□□□□ 0.32
CHD8-212ENST00000557329 POTEDQ86YR6 584 aa16.97■□□□□ 0.31
CHD8-212ENST00000557329 PIAS4Q8N2W9 510 aaPredicted RBP16.87■□□□□ 0.29
CHD8-212ENST00000557329 PPP6R1Q9UPN7 881 aa16.76■□□□□ 0.27
CHD8-212ENST00000557329 ADRA2BP18089 450 aa16.69■□□□□ 0.26
CHD8-212ENST00000557329 DMRT2Q9Y5R5 561 aa15.39■□□□□ 0.05
CHD8-212ENST00000557329 MAPK8IP2Q13387 824 aaPredicted RBP15.38■□□□□ 0.05
CHD8-212ENST00000557329 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
CHD8-212ENST00000557329 PPP4R3CPQ6ZMV5 832 aa14.87□□□□□ -0.03
CHD8-212ENST00000557329 HOXD11P31277 338 aaPredicted RBP14.77□□□□□ -0.05
CHD8-212ENST00000557329 CACNB1Q02641 598 aaPredicted RBP14.74□□□□□ -0.05
CHD8-212ENST00000557329 DCAF8L1A6NGE4 600 aa14.69□□□□□ -0.06
CHD8-212ENST00000557329 CNKSR2Q8WXI2 1034 aa14.67□□□□□ -0.06
CHD8-212ENST00000557329 RNF216Q9NWF9 866 aaPredicted RBP14.59□□□□□ -0.07
CHD8-212ENST00000557329 RNF39Q9H2S5 420 aa14.54□□□□□ -0.08
CHD8-212ENST00000557329 DNAJC5BQ9UF47 199 aa14.36□□□□□ -0.11
CHD8-212ENST00000557329 C1QBPQ07021 282 aaKnown RBP14.34□□□□□ -0.11
CHD8-212ENST00000557329 NCBP3Q53F19 620 aaKnown RBP14.27□□□□□ -0.13
CHD8-212ENST00000557329 NPM3O75607 178 aaKnown RBP14.03□□□□□ -0.16
CHD8-212ENST00000557329 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.02□□□□□ -0.172e-7■■□□□ 13.5
CHD8-212ENST00000557329 KCNA4P22459 653 aa13.87□□□□□ -0.19
CHD8-212ENST00000557329 U3KPZ7 1027 aaPredicted RBP13.71□□□□□ -0.21
CHD8-212ENST00000557329 CAPN15O75808 1086 aa13.54□□□□□ -0.24
CHD8-212ENST00000557329 DSG3P32926 999 aa13.54□□□□□ -0.24
CHD8-212ENST00000557329 SPINK5Q9NQ38 1064 aaPredicted RBP13.54□□□□□ -0.24
CHD8-212ENST00000557329 SLC4A2P04920 1241 aa13.45□□□□□ -0.26
CHD8-212ENST00000557329 APLP2Q06481 763 aa13.37□□□□□ -0.27
CHD8-212ENST00000557329 SLC4A1APQ9BWU0 796 aaKnown RBP13.31□□□□□ -0.28
CHD8-212ENST00000557329 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.3□□□□□ -0.28
CHD8-212ENST00000557329 HNRNPUL2Q1KMD3 747 aaKnown RBP13.3□□□□□ -0.28
CHD8-212ENST00000557329 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
CHD8-212ENST00000557329 TRHP20396 242 aaPredicted RBP13.26□□□□□ -0.29
CHD8-212ENST00000557329 POTEHQ6S545 545 aa13.26□□□□□ -0.29
CHD8-212ENST00000557329 SAMD1Q6SPF0 538 aaPredicted RBP13.2□□□□□ -0.3
CHD8-212ENST00000557329 ABCB7O75027 752 aa13.18□□□□□ -0.3
CHD8-212ENST00000557329 MYCNP04198 464 aaPredicted RBP13□□□□□ -0.33
CHD8-212ENST00000557329 RBM42Q9BTD8 480 aaKnown RBP12.96□□□□□ -0.33
CHD8-212ENST00000557329 FOXD4L1Q9NU39 408 aa12.92□□□□□ -0.34
CHD8-212ENST00000557329 POLA2Q14181 598 aa12.88□□□□□ -0.35
CHD8-212ENST00000557329 EHMT2Q96KQ7 1210 aa12.74□□□□□ -0.37
CHD8-212ENST00000557329 CHRDL2Q6WN34 429 aa12.71□□□□□ -0.37
CHD8-212ENST00000557329 ZBTB22O15209 634 aa12.67□□□□□ -0.38
CHD8-212ENST00000557329 ATF5Q9Y2D1 282 aaPredicted RBP12.66□□□□□ -0.38
CHD8-212ENST00000557329 ZBTB12Q9Y330 459 aaPredicted RBP12.66□□□□□ -0.38
CHD8-212ENST00000557329 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.38
CHD8-212ENST00000557329 ATXN8OSP0DMR3 200 aa12.61□□□□□ -0.39
CHD8-212ENST00000557329 AKT1S1Q96B36 256 aa12.61□□□□□ -0.39
CHD8-212ENST00000557329 REM2Q8IYK8 340 aaPredicted RBP12.46□□□□□ -0.41
CHD8-212ENST00000557329 OSCARQ8IYS5 282 aa12.46□□□□□ -0.41
CHD8-212ENST00000557329 PIP4P2Q8N4L2 257 aa12.36□□□□□ -0.43
CHD8-212ENST00000557329 SP7Q8TDD2 431 aaPredicted RBP12.35□□□□□ -0.43
CHD8-212ENST00000557329 PITPNM1O00562 1244 aa12.32□□□□□ -0.44
CHD8-212ENST00000557329 FXR2P51116 673 aaKnown RBP eCLIP12.28□□□□□ -0.44
CHD8-212ENST00000557329 SPDYE2BA6NHP3 402 aa12.25□□□□□ -0.45
CHD8-212ENST00000557329 SPDYE6P0CI01 402 aa12.25□□□□□ -0.45
CHD8-212ENST00000557329 SPDYE2Q495Y8 402 aa12.25□□□□□ -0.45
CHD8-212ENST00000557329 FBLN2P98095 1184 aa12.23□□□□□ -0.45
CHD8-212ENST00000557329 HAX1O00165 279 aa12.18□□□□□ -0.46
CHD8-212ENST00000557329 MKRN4PQ13434 485 aaPredicted RBP12.09□□□□□ -0.47
CHD8-212ENST00000557329 SPDYE1Q8NFV5 336 aaPredicted RBP12.06□□□□□ -0.48
CHD8-212ENST00000557329 SSUH2Q9Y2M2 353 aa12.05□□□□□ -0.48
CHD8-212ENST00000557329 ZNF692Q9BU19 519 aaPredicted RBP12.03□□□□□ -0.48
CHD8-212ENST00000557329 PRKAR2AP13861 404 aaKnown RBP12□□□□□ -0.49
CHD8-212ENST00000557329 EVX2Q03828 476 aa12□□□□□ -0.49
CHD8-212ENST00000557329 CLEC11AQ9Y240 323 aa12□□□□□ -0.49
CHD8-212ENST00000557329 C19orf67A6NJJ6 358 aa11.9□□□□□ -0.5
CHD8-212ENST00000557329 PABPN1Q86U42 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
CHD8-212ENST00000557329 PRR29P0C7W0 189 aa11.81□□□□□ -0.52
CHD8-212ENST00000557329 CHADLQ6NUI6 762 aa11.79□□□□□ -0.52
CHD8-212ENST00000557329 GABBR2O75899 941 aa11.75□□□□□ -0.53
CHD8-212ENST00000557329 FARP1Q9Y4F1 1045 aaPredicted RBP11.64□□□□□ -0.55
CHD8-212ENST00000557329 CD44P16070 742 aaKnown RBP11.61□□□□□ -0.55
CHD8-212ENST00000557329 CLCN6P51797 869 aa11.59□□□□□ -0.55
CHD8-212ENST00000557329 SPDYE4A6NLX3 237 aa11.58□□□□□ -0.56
CHD8-212ENST00000557329 LHX8Q68G74 356 aa11.57□□□□□ -0.56
CHD8-212ENST00000557329 STAG3Q9UJ98 1225 aa11.53□□□□□ -0.56
CHD8-212ENST00000557329 POTEIP0CG38 1075 aa11.49□□□□□ -0.57
CHD8-212ENST00000557329 FKBP8Q14318 412 aa11.48□□□□□ -0.57
CHD8-212ENST00000557329 CREBZFQ9NS37 354 aa11.46□□□□□ -0.57
CHD8-212ENST00000557329 ZNF579Q8NAF0 562 aaKnown RBP11.45□□□□□ -0.58
CHD8-212ENST00000557329 ZRANB1Q9UGI0 708 aa11.4□□□□□ -0.58
CHD8-212ENST00000557329 PROM2Q8N271 834 aa11.39□□□□□ -0.59
CHD8-212ENST00000557329 DCBLD2Q96PD2 775 aa11.39□□□□□ -0.59
CHD8-212ENST00000557329 FBXO3Q9UK99 471 aa11.32□□□□□ -0.6
CHD8-212ENST00000557329 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
CHD8-212ENST00000557329 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHD8-212ENST00000557329 GALR2O43603 387 aaPredicted RBP11.27□□□□□ -0.61
CHD8-212ENST00000557329 MNX1P50219 401 aaPredicted RBP11.25□□□□□ -0.61
CHD8-212ENST00000557329 PHF12Q96QT6 1004 aa11.21□□□□□ -0.61
CHD8-212ENST00000557329 PLEKHG5O94827 1062 aa11.16□□□□□ -0.62
CHD8-212ENST00000557329 OTUD5Q96G74 571 aa11.11□□□□□ -0.63
CHD8-212ENST00000557329 POTEB2H3BUK9 544 aa11.09□□□□□ -0.63
CHD8-212ENST00000557329 PELP1Q8IZL8 1130 aaKnown RBP11.08□□□□□ -0.64
CHD8-212ENST00000557329 ASTLQ6HA08 431 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms