Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HLA-DOAP06340 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19■□□□□ 0.63
HLA-DOAP06340 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
HLA-DOAP06340 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19■□□□□ 0.63
HLA-DOAP06340 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HLA-DOAP06340 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC19■□□□□ 0.63
HLA-DOAP06340 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HLA-DOAP06340 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC19■□□□□ 0.63
HLA-DOAP06340 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
HLA-DOAP06340 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 FLJ38576-201ENST00000623820 2459 ntBASIC18.99■□□□□ 0.63
HLA-DOAP06340 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 WASH4P-201ENST00000564273 1246 ntBASIC18.99■□□□□ 0.63
HLA-DOAP06340 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 AC009053.2-201ENST00000563701 2365 ntBASIC18.99■□□□□ 0.63
HLA-DOAP06340 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.99■□□□□ 0.63
HLA-DOAP06340 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DOAP06340 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 RN7SL752P-201ENST00000463779 287 ntBASIC18.98■□□□□ 0.63
HLA-DOAP06340 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DOAP06340 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.98■□□□□ 0.63
HLA-DOAP06340 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 Z97205.2-201ENST00000564697 1639 ntBASIC18.97■□□□□ 0.63
HLA-DOAP06340 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 AZGP1P1-201ENST00000411909 902 ntBASIC18.97■□□□□ 0.63
HLA-DOAP06340 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 MEIS3P1-201ENST00000495167 958 ntBASIC18.97■□□□□ 0.63
HLA-DOAP06340 AC011495.1-201ENST00000498085 584 ntBASIC18.97■□□□□ 0.63
HLA-DOAP06340 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
HLA-DOAP06340 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DOAP06340 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms