Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS4BO75351 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
VPS4BO75351 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 AC069224.1-201ENST00000566372 1715 ntBASIC15.95■□□□□ 0.14
VPS4BO75351 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
VPS4BO75351 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4BO75351 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS4BO75351 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
VPS4BO75351 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4BO75351 VN2R19P-201ENST00000442399 1052 ntBASIC15.95■□□□□ 0.14
VPS4BO75351 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4BO75351 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS4BO75351 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4BO75351 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS4BO75351 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS4BO75351 AL096865.1-201ENST00000606796 927 ntBASIC15.95■□□□□ 0.14
VPS4BO75351 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.95■□□□□ 0.14
VPS4BO75351 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS4BO75351 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.95■□□□□ 0.14
VPS4BO75351 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS4BO75351 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS4BO75351 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.94■□□□□ 0.14
VPS4BO75351 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 AL592424.1-201ENST00000563624 1536 ntBASIC15.94■□□□□ 0.14
VPS4BO75351 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.94■□□□□ 0.14
VPS4BO75351 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.94■□□□□ 0.14
VPS4BO75351 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
VPS4BO75351 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 AC093028.1-201ENST00000622998 982 ntBASIC15.94■□□□□ 0.14
VPS4BO75351 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 AC006504.4-201ENST00000592118 1568 ntBASIC15.94■□□□□ 0.14
VPS4BO75351 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 AC126177.1-201ENST00000547829 2218 ntBASIC15.94■□□□□ 0.14
VPS4BO75351 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.94■□□□□ 0.14
VPS4BO75351 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 AC022532.1-201ENST00000624563 1728 ntBASIC15.94■□□□□ 0.14
VPS4BO75351 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
VPS4BO75351 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
VPS4BO75351 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS4BO75351 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS4BO75351 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 AL596257.1-201ENST00000641463 2694 ntBASIC15.93■□□□□ 0.14
VPS4BO75351 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms