Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP4O75161 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP4O75161 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 AC008132.1-202ENST00000342005 1389 ntBASIC22.32■■□□□ 1.16
NPHP4O75161 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC22.32■■□□□ 1.16
NPHP4O75161 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP4O75161 AL603756.1-201ENST00000606511 2163 ntBASIC22.32■■□□□ 1.16
NPHP4O75161 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP4O75161 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP4O75161 ACTBP8-201ENST00000403258 1108 ntBASIC22.31■■□□□ 1.16
NPHP4O75161 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
NPHP4O75161 NUP210P1-202ENST00000504322 710 ntBASIC22.31■■□□□ 1.16
NPHP4O75161 AC022217.1-201ENST00000521069 738 ntBASIC22.31■■□□□ 1.16
NPHP4O75161 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC22.31■■□□□ 1.16
NPHP4O75161 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP4O75161 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP4O75161 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP4O75161 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP4O75161 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC22.31■■□□□ 1.16
NPHP4O75161 SMS-201ENST00000379404 1174 ntTSL 3 BASIC22.31■■□□□ 1.16
NPHP4O75161 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP4O75161 AC024681.1-201ENST00000521917 487 ntBASIC22.31■■□□□ 1.16
NPHP4O75161 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP4O75161 AL645939.5-201ENST00000606834 243 ntBASIC22.31■■□□□ 1.16
NPHP4O75161 AL353726.2-201ENST00000623259 884 ntBASIC22.31■■□□□ 1.16
NPHP4O75161 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP4O75161 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP4O75161 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP4O75161 TUBBP5-203ENST00000508529 1334 ntBASIC22.3■■□□□ 1.16
NPHP4O75161 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC22.3■■□□□ 1.16
NPHP4O75161 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
NPHP4O75161 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 PHKG1P2-201ENST00000457537 863 ntBASIC22.3■■□□□ 1.16
NPHP4O75161 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
NPHP4O75161 RNF41-210ENST00000552244 716 ntTSL 3 BASIC22.3■■□□□ 1.16
NPHP4O75161 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 HLA-C-210ENST00000640219 976 ntBASIC22.3■■□□□ 1.16
NPHP4O75161 AC067852.2-201ENST00000590513 2313 ntBASIC22.3■■□□□ 1.16
NPHP4O75161 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP4O75161 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
NPHP4O75161 NEFHP1-201ENST00000412845 2629 ntBASIC22.29■■□□□ 1.16
NPHP4O75161 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC22.29■■□□□ 1.16
NPHP4O75161 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC22.29■■□□□ 1.16
NPHP4O75161 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC22.29■■□□□ 1.16
NPHP4O75161 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
NPHP4O75161 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC22.29■■□□□ 1.16
NPHP4O75161 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC22.29■■□□□ 1.16
NPHP4O75161 MSRA-203ENST00000441698 788 ntTSL 2 BASIC22.29■■□□□ 1.16
NPHP4O75161 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC22.29■■□□□ 1.16
NPHP4O75161 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC22.29■■□□□ 1.16
NPHP4O75161 RN7SL774P-201ENST00000577467 290 ntBASIC22.29■■□□□ 1.16
NPHP4O75161 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
NPHP4O75161 AC091544.8-201ENST00000619490 361 ntBASIC22.29■■□□□ 1.16
NPHP4O75161 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC22.29■■□□□ 1.16
NPHP4O75161 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
NPHP4O75161 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
NPHP4O75161 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP4O75161 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC22.28■■□□□ 1.16
NPHP4O75161 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC22.28■■□□□ 1.16
NPHP4O75161 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms