Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.07■□□□□ 0.8
CACNA1FO60840 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
CACNA1FO60840 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.07■□□□□ 0.8
CACNA1FO60840 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CACNA1FO60840 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CACNA1FO60840 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CACNA1FO60840 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1FO60840 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1FO60840 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1FO60840 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CACNA1FO60840 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.06■□□□□ 0.8
CACNA1FO60840 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1FO60840 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1FO60840 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1FO60840 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1FO60840 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1FO60840 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.06■□□□□ 0.8
CACNA1FO60840 AL353779.1-201ENST00000434793 351 ntBASIC20.06■□□□□ 0.8
CACNA1FO60840 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 TERF1P3-201ENST00000505638 1227 ntBASIC20.06■□□□□ 0.8
CACNA1FO60840 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1FO60840 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1FO60840 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1FO60840 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 DGCR5-201ENST00000399539 862 ntBASIC20.05■□□□□ 0.8
CACNA1FO60840 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.05■□□□□ 0.8
CACNA1FO60840 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.05■□□□□ 0.8
CACNA1FO60840 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC20.05■□□□□ 0.8
CACNA1FO60840 AC107373.2-201ENST00000607735 490 ntBASIC20.05■□□□□ 0.8
CACNA1FO60840 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CACNA1FO60840 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CACNA1FO60840 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1FO60840 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CACNA1FO60840 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.04■□□□□ 0.8
CACNA1FO60840 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.04■□□□□ 0.8
CACNA1FO60840 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.04■□□□□ 0.8
CACNA1FO60840 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1FO60840 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1FO60840 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.04■□□□□ 0.8
CACNA1FO60840 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1FO60840 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms