Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.63■□□□□ 0.09
SLC28A1O00337 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 PMS2P7-201ENST00000506558 1336 ntBASIC15.63■□□□□ 0.09
SLC28A1O00337 BCAR1-209ENST00000546196 1340 ntBASIC15.63■□□□□ 0.09
SLC28A1O00337 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 AL589702.1-201ENST00000641229 1509 ntBASIC15.63■□□□□ 0.09
SLC28A1O00337 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SLC28A1O00337 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
SLC28A1O00337 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC025580.3-201ENST00000617932 1424 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
SLC28A1O00337 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
SLC28A1O00337 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC002347.1-201ENST00000569543 541 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 MIR4321-201ENST00000592276 80 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AL161645.1-201ENST00000622716 1255 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 AC004877.2-201ENST00000623941 599 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC011477.6-201ENST00000604980 1927 ntBASIC15.62■□□□□ 0.09
SLC28A1O00337 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SLC28A1O00337 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.62■□□□□ 0.09
SLC28A1O00337 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SLC28A1O00337 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC28A1O00337 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC28A1O00337 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.61■□□□□ 0.09
SLC28A1O00337 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC28A1O00337 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC28A1O00337 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.61■□□□□ 0.09
SLC28A1O00337 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SLC28A1O00337 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC28A1O00337 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
SLC28A1O00337 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms