Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MIR4281-201ENST00000580852 62 ntBASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLCF1Q9UBD9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 AC137630.3-201ENST00000607245 391 ntBASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLCF1Q9UBD9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.06■□□□□ 0.96
CLCF1Q9UBD9 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 KRT125P-201ENST00000546827 989 ntBASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
CLCF1Q9UBD9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLCF1Q9UBD9 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLCF1Q9UBD9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CLCF1Q9UBD9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.03■□□□□ 0.96
CLCF1Q9UBD9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.03■□□□□ 0.96
CLCF1Q9UBD9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.03■□□□□ 0.96
CLCF1Q9UBD9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 MIR4787-201ENST00000607364 84 ntBASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.02■□□□□ 0.96
CLCF1Q9UBD9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLCF1Q9UBD9 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 AC021242.3-201ENST00000607598 1377 ntBASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLCF1Q9UBD9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLCF1Q9UBD9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21■□□□□ 0.95
CLCF1Q9UBD9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21■□□□□ 0.95
CLCF1Q9UBD9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
CLCF1Q9UBD9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21■□□□□ 0.95
CLCF1Q9UBD9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CLCF1Q9UBD9 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLCF1Q9UBD9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21■□□□□ 0.95
CLCF1Q9UBD9 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLCF1Q9UBD9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLCF1Q9UBD9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 AL356441.2-201ENST00000443009 864 ntBASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
CLCF1Q9UBD9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCF1Q9UBD9 DUSP8P4-201ENST00000399538 1761 ntBASIC20.97■□□□□ 0.95
CLCF1Q9UBD9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms