Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AC024267.1-201ENST00000582320 895 ntBASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 MIR6069-201ENST00000620069 79 ntBASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 GPR182-203ENST00000622922 591 ntBASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AL033527.5-201ENST00000641382 801 ntBASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMD1Q9UGP4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 AL133338.1-201ENST00000565695 1517 ntBASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 AC104989.1-201ENST00000519711 778 ntBASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 RN7SL602P-201ENST00000578326 324 ntBASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 AC026979.3-201ENST00000607315 403 ntBASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 AC006277.1-201ENST00000624348 1610 ntBASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIMD1Q9UGP4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 SPDYE17-201ENST00000412399 783 ntBASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 RN7SL219P-201ENST00000582872 296 ntBASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 TMEM261P1-201ENST00000604899 340 ntBASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMD1Q9UGP4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMD1Q9UGP4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms