Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HMGB4Q8WW32 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.21■□□□□ 0.18
HMGB4Q8WW32 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AC005915.1-201ENST00000624912 2018 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AC092337.1-201ENST00000568699 1129 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AC025048.3-201ENST00000590609 569 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 MIR4321-201ENST00000592276 80 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AL365330.1-201ENST00000607459 531 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 AC005702.4-201ENST00000618393 416 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 MIR6799-201ENST00000620297 69 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 CLK3P2-201ENST00000427566 1453 ntBASIC16.2■□□□□ 0.18
HMGB4Q8WW32 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.2■□□□□ 0.18
HMGB4Q8WW32 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 LINC01144-201ENST00000626198 1710 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 PCDHA12-202ENST00000613593 2588 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC234783.1-201ENST00000441761 496 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC022210.1-201ENST00000449856 793 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC007389.4-201ENST00000454674 793 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC104596.2-201ENST00000512793 793 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 AL512343.1-201ENST00000605837 169 ntBASIC16.19■□□□□ 0.18
HMGB4Q8WW32 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB4Q8WW32 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 FO393414.2-201ENST00000405153 598 ntBASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms