Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 MEP1AP4-201ENST00000423244 1087 ntBASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AC011495.1-201ENST00000498085 584 ntBASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AC074044.1-201ENST00000609673 707 ntBASIC15.74■□□□□ 0.11
LMX1AQ8TE12 NFIC-211ENST00000641145 8399 ntBASIC15.74■□□□□ 0.11
LMX1AQ8TE12 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 LETM1P2-201ENST00000597330 2178 ntBASIC15.74■□□□□ 0.11
LMX1AQ8TE12 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 FO393414.2-201ENST00000405153 598 ntBASIC15.73■□□□□ 0.11
LMX1AQ8TE12 MYCLP2-201ENST00000449268 967 ntBASIC15.73■□□□□ 0.11
LMX1AQ8TE12 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 GIMAP3P-201ENST00000495150 836 ntBASIC15.73■□□□□ 0.11
LMX1AQ8TE12 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1AQ8TE12 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 AC123567.1-201ENST00000548294 1261 ntBASIC15.72■□□□□ 0.11
LMX1AQ8TE12 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 AC025048.3-201ENST00000590609 569 ntBASIC15.72■□□□□ 0.11
LMX1AQ8TE12 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 AC005702.4-201ENST00000618393 416 ntBASIC15.72■□□□□ 0.11
LMX1AQ8TE12 IGHV3-72-202ENST00000621503 303 ntBASIC15.72■□□□□ 0.11
LMX1AQ8TE12 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
LMX1AQ8TE12 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms