Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 MIR1908-201ENST00000410394 80 ntBASIC15.62■□□□□ 0.09
COL28A1Q2UY09 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.62■□□□□ 0.09
COL28A1Q2UY09 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL28A1Q2UY09 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC093004.1-201ENST00000508850 424 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC104989.1-201ENST00000519711 778 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AL138918.1-201ENST00000568306 659 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC005412.3-201ENST00000580309 715 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 RN7SL190P-201ENST00000582519 257 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 FRMD8P1-201ENST00000440433 1524 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 AC060834.1-201ENST00000443027 2032 ntBASIC15.61■□□□□ 0.09
COL28A1Q2UY09 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
COL28A1Q2UY09 CETN4P-206ENST00000642099 2168 ntBASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 MTND6P24-201ENST00000440466 518 ntBASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AC099548.2-209ENST00000480264 625 ntBASIC15.6■□□□□ 0.09
COL28A1Q2UY09 DOC2GP-202ENST00000514950 1163 ntBASIC15.6■□□□□ 0.09
COL28A1Q2UY09 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AC124947.2-201ENST00000547118 1133 ntBASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms