Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.98■□□□□ 0.15
PKNOX1P55347 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
PKNOX1P55347 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.98■□□□□ 0.15
PKNOX1P55347 AL031055.1-201ENST00000606362 631 ntBASIC15.98■□□□□ 0.15
PKNOX1P55347 AC022532.1-201ENST00000624563 1728 ntBASIC15.98■□□□□ 0.15
PKNOX1P55347 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.98■□□□□ 0.15
PKNOX1P55347 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 U82695.1-201ENST00000635752 1889 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 LINC02447-202ENST00000501888 2146 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 HMGA1P7-201ENST00000406908 502 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.97■□□□□ 0.15
PKNOX1P55347 AL031432.2-201ENST00000566714 459 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 AL928711.1-201ENST00000570165 459 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 AC117500.6-201ENST00000624871 588 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 FAM215A-202ENST00000632077 792 ntBASIC15.97■□□□□ 0.15
PKNOX1P55347 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.97■□□□□ 0.15
PKNOX1P55347 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.97■□□□□ 0.15
PKNOX1P55347 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PKNOX1P55347 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PKNOX1P55347 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
PKNOX1P55347 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PKNOX1P55347 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.96■□□□□ 0.15
PKNOX1P55347 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.96■□□□□ 0.15
PKNOX1P55347 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.96■□□□□ 0.15
PKNOX1P55347 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 PPT1-215ENST00000641471 2368 ntBASIC15.96■□□□□ 0.15
PKNOX1P55347 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.96■□□□□ 0.15
PKNOX1P55347 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.96■□□□□ 0.15
PKNOX1P55347 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.96■□□□□ 0.15
PKNOX1P55347 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 AC069224.1-201ENST00000566372 1715 ntBASIC15.96■□□□□ 0.15
PKNOX1P55347 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.96■□□□□ 0.15
PKNOX1P55347 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PKNOX1P55347 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PKNOX1P55347 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.96■□□□□ 0.14
PKNOX1P55347 AC112504.1-201ENST00000623415 1841 ntBASIC15.96■□□□□ 0.14
PKNOX1P55347 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
PKNOX1P55347 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms