Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.83■□□□□ 0.28
PTPN9P43378 AL139010.1-201ENST00000454878 894 ntBASIC16.83■□□□□ 0.28
PTPN9P43378 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.83■□□□□ 0.28
PTPN9P43378 LINC02199-201ENST00000506655 2702 ntBASIC16.83■□□□□ 0.28
PTPN9P43378 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.83■□□□□ 0.28
PTPN9P43378 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 AL512356.2-201ENST00000546955 174 ntBASIC16.83■□□□□ 0.28
PTPN9P43378 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.83■□□□□ 0.28
PTPN9P43378 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.83■□□□□ 0.28
PTPN9P43378 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.83■□□□□ 0.28
PTPN9P43378 AC026979.3-201ENST00000607315 403 ntBASIC16.83■□□□□ 0.28
PTPN9P43378 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 AP001059.3-201ENST00000619053 235 ntBASIC16.83■□□□□ 0.28
PTPN9P43378 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.83■□□□□ 0.28
PTPN9P43378 AC079781.4-201ENST00000641908 219 ntBASIC16.83■□□□□ 0.28
PTPN9P43378 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN9P43378 AC134407.2-201ENST00000625089 1978 ntBASIC16.82■□□□□ 0.28
PTPN9P43378 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.82■□□□□ 0.28
PTPN9P43378 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN9P43378 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 AC004987.2-201ENST00000395959 1148 ntBASIC16.82■□□□□ 0.28
PTPN9P43378 AL353705.2-201ENST00000428243 662 ntBASIC16.82■□□□□ 0.28
PTPN9P43378 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.82■□□□□ 0.28
PTPN9P43378 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.82■□□□□ 0.28
PTPN9P43378 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
PTPN9P43378 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTPN9P43378 AL596442.2-201ENST00000610240 980 ntBASIC16.82■□□□□ 0.28
PTPN9P43378 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PTPN9P43378 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN9P43378 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN9P43378 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN9P43378 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN9P43378 AL136982.4-201ENST00000437689 1740 ntBASIC16.82■□□□□ 0.28
PTPN9P43378 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN9P43378 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN9P43378 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
PTPN9P43378 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN9P43378 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN9P43378 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.81■□□□□ 0.28
PTPN9P43378 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.81■□□□□ 0.28
PTPN9P43378 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.81■□□□□ 0.28
PTPN9P43378 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.81■□□□□ 0.28
PTPN9P43378 AL691403.2-201ENST00000618460 490 ntBASIC16.81■□□□□ 0.28
PTPN9P43378 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN9P43378 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms