Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CUX1P39880 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC26.58■■□□□ 1.85
CUX1P39880 AC005052.1-201ENST00000625181 2492 ntBASIC26.58■■□□□ 1.85
CUX1P39880 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC26.58■■□□□ 1.85
CUX1P39880 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
CUX1P39880 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 RNU1-114P-201ENST00000365297 166 ntBASIC26.58■■□□□ 1.85
CUX1P39880 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 RPSAP36-202ENST00000494591 1261 ntBASIC26.58■■□□□ 1.85
CUX1P39880 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC26.58■■□□□ 1.85
CUX1P39880 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC26.58■■□□□ 1.85
CUX1P39880 KSR1-207ENST00000578981 748 ntTSL 4 BASIC26.58■■□□□ 1.85
CUX1P39880 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC26.58■■□□□ 1.85
CUX1P39880 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC26.58■■□□□ 1.85
CUX1P39880 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CUX1P39880 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC26.58■■□□□ 1.85
CUX1P39880 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
CUX1P39880 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC26.57■■□□□ 1.84
CUX1P39880 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC26.57■■□□□ 1.84
CUX1P39880 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 AC106872.11-201ENST00000605838 421 ntBASIC26.57■■□□□ 1.84
CUX1P39880 OS9-205ENST00000413095 1660 ntTSL 2 BASIC26.57■■□□□ 1.84
CUX1P39880 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CUX1P39880 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC26.57■■□□□ 1.84
CUX1P39880 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC26.57■■□□□ 1.84
CUX1P39880 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
CUX1P39880 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC26.56■■□□□ 1.84
CUX1P39880 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC26.56■■□□□ 1.84
CUX1P39880 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC26.56■■□□□ 1.84
CUX1P39880 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 AL133267.1-201ENST00000398220 340 ntBASIC26.56■■□□□ 1.84
CUX1P39880 AC092506.1-202ENST00000401022 528 ntBASIC26.56■■□□□ 1.84
CUX1P39880 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC26.56■■□□□ 1.84
CUX1P39880 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC26.56■■□□□ 1.84
CUX1P39880 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 AC018470.1-201ENST00000624790 3129 ntBASIC26.56■■□□□ 1.84
CUX1P39880 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC26.56■■□□□ 1.84
CUX1P39880 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC26.56■■□□□ 1.84
CUX1P39880 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC26.56■■□□□ 1.84
CUX1P39880 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC26.56■■□□□ 1.84
CUX1P39880 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUX1P39880 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC26.55■■□□□ 1.84
CUX1P39880 RPS3-201ENST00000278572 907 ntTSL 3 BASIC26.55■■□□□ 1.84
CUX1P39880 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC26.55■■□□□ 1.84
CUX1P39880 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
CUX1P39880 AL022328.3-201ENST00000607943 679 ntBASIC26.55■■□□□ 1.84
CUX1P39880 AL096828.3-201ENST00000615354 462 ntBASIC26.55■■□□□ 1.84
CUX1P39880 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
CUX1P39880 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC26.55■■□□□ 1.84
CUX1P39880 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
CUX1P39880 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC26.55■■□□□ 1.84
CUX1P39880 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC26.55■■□□□ 1.84
CUX1P39880 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC26.55■■□□□ 1.84
CUX1P39880 HIST2H2BC-201ENST00000498492 580 ntBASIC26.55■■□□□ 1.84
CUX1P39880 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC26.55■■□□□ 1.84
CUX1P39880 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CUX1P39880 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC26.55■■□□□ 1.84
CUX1P39880 EEF1DP1-201ENST00000585891 896 ntBASIC26.55■■□□□ 1.84
CUX1P39880 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC26.55■■□□□ 1.84
CUX1P39880 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC26.54■■□□□ 1.84
CUX1P39880 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms