Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC20.78■□□□□ 0.92
RXRBP28702 PIN4P1-201ENST00000451079 396 ntBASIC20.78■□□□□ 0.92
RXRBP28702 AC116345.2-201ENST00000512837 523 ntBASIC20.78■□□□□ 0.92
RXRBP28702 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
RXRBP28702 DNM1P51-201ENST00000558149 522 ntBASIC20.78■□□□□ 0.92
RXRBP28702 DNM1P30-201ENST00000563586 452 ntBASIC20.78■□□□□ 0.92
RXRBP28702 RN7SL48P-201ENST00000579283 293 ntBASIC20.78■□□□□ 0.92
RXRBP28702 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
RXRBP28702 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RXRBP28702 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RXRBP28702 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RXRBP28702 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
RXRBP28702 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.77■□□□□ 0.92
RXRBP28702 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RXRBP28702 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
RXRBP28702 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC20.77■□□□□ 0.92
RXRBP28702 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC20.77■□□□□ 0.92
RXRBP28702 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.77■□□□□ 0.92
RXRBP28702 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC20.77■□□□□ 0.92
RXRBP28702 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
RXRBP28702 BUD31-205ENST00000456893 512 ntTSL 5 BASIC20.77■□□□□ 0.92
RXRBP28702 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC20.77■□□□□ 0.92
RXRBP28702 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC20.77■□□□□ 0.92
RXRBP28702 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20.77■□□□□ 0.92
RXRBP28702 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC20.77■□□□□ 0.92
RXRBP28702 AL023803.2-201ENST00000620080 638 ntBASIC20.77■□□□□ 0.92
RXRBP28702 AC138466.4-201ENST00000623965 852 ntBASIC20.77■□□□□ 0.92
RXRBP28702 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
RXRBP28702 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RXRBP28702 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RXRBP28702 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.77■□□□□ 0.92
RXRBP28702 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
RXRBP28702 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RXRBP28702 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.77■□□□□ 0.91
RXRBP28702 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
RXRBP28702 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
RXRBP28702 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.76■□□□□ 0.91
RXRBP28702 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
RXRBP28702 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.76■□□□□ 0.91
RXRBP28702 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC20.76■□□□□ 0.91
RXRBP28702 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 AC021723.1-201ENST00000486306 515 ntBASIC20.76■□□□□ 0.91
RXRBP28702 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 IGHV3-37-201ENST00000518544 340 ntBASIC20.76■□□□□ 0.91
RXRBP28702 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
RXRBP28702 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 AL157791.1-201ENST00000553667 1699 ntBASIC20.76■□□□□ 0.91
RXRBP28702 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RXRBP28702 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RXRBP28702 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.75■□□□□ 0.91
RXRBP28702 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.75■□□□□ 0.91
RXRBP28702 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 KRT8P29-201ENST00000420409 1371 ntBASIC20.75■□□□□ 0.91
RXRBP28702 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.75■□□□□ 0.91
RXRBP28702 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 AL121723.1-201ENST00000445194 1519 ntBASIC20.75■□□□□ 0.91
RXRBP28702 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC20.75■□□□□ 0.91
RXRBP28702 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RXRBP28702 PDIA3P2-201ENST00000428073 158 ntBASIC20.75■□□□□ 0.91
RXRBP28702 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC20.75■□□□□ 0.91
RXRBP28702 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
RXRBP28702 EID1-202ENST00000560490 584 ntTSL 3 BASIC20.75■□□□□ 0.91
RXRBP28702 SYT17-208ENST00000568433 812 ntTSL 3 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms