Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC099521.3-201ENST00000624251 2938 ntBASIC12.65□□□□□ -0.39
CXCL1P09341 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.39
CXCL1P09341 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.64□□□□□ -0.39
CXCL1P09341 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 FGD5P1-202ENST00000614866 2498 ntBASIC12.64□□□□□ -0.39
CXCL1P09341 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 FUT8-AS1-201ENST00000621019 1521 ntBASIC12.64□□□□□ -0.39
CXCL1P09341 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 AC092919.2-201ENST00000623631 1645 ntBASIC12.64□□□□□ -0.39
CXCL1P09341 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 ANKRD20A18P-201ENST00000359341 492 ntBASIC12.64□□□□□ -0.39
CXCL1P09341 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC12.64□□□□□ -0.39
CXCL1P09341 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC12.64□□□□□ -0.39
CXCL1P09341 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 AJ011931.1-201ENST00000618749 2492 ntBASIC12.64□□□□□ -0.39
CXCL1P09341 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.64□□□□□ -0.39
CXCL1P09341 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CXCL1P09341 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CXCL1P09341 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 REXO1L1P-202ENST00000608646 1974 ntBASIC12.63□□□□□ -0.39
CXCL1P09341 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
CXCL1P09341 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC12.63□□□□□ -0.39
CXCL1P09341 SNORA78-201ENST00000459373 127 ntBASIC12.63□□□□□ -0.39
CXCL1P09341 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC12.63□□□□□ -0.39
CXCL1P09341 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC12.63□□□□□ -0.39
CXCL1P09341 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 AL390719.2-201ENST00000606993 987 ntBASIC12.63□□□□□ -0.39
CXCL1P09341 AL023973.1-201ENST00000624619 620 ntBASIC12.63□□□□□ -0.39
CXCL1P09341 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.63□□□□□ -0.39
CXCL1P09341 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
CXCL1P09341 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CXCL1P09341 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CXCL1P09341 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms