Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
MBD4O95243 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
MBD4O95243 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
MBD4O95243 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.28■□□□□ 0.68
MBD4O95243 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
MBD4O95243 PCDHB19P-201ENST00000570871 2371 ntBASIC19.28■□□□□ 0.68
MBD4O95243 MTHFR-217ENST00000641820 1569 ntBASIC19.28■□□□□ 0.68
MBD4O95243 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
MBD4O95243 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
MBD4O95243 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 HAUS4P1-201ENST00000406739 1145 ntBASIC19.28■□□□□ 0.68
MBD4O95243 RN7SL618P-201ENST00000477850 296 ntBASIC19.28■□□□□ 0.68
MBD4O95243 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.28■□□□□ 0.68
MBD4O95243 AC008738.7-201ENST00000609744 511 ntBASIC19.28■□□□□ 0.68
MBD4O95243 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
MBD4O95243 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
MBD4O95243 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
MBD4O95243 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
MBD4O95243 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.28■□□□□ 0.68
MBD4O95243 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.28■□□□□ 0.68
MBD4O95243 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.28■□□□□ 0.68
MBD4O95243 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
MBD4O95243 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
MBD4O95243 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MBD4O95243 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MBD4O95243 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.27■□□□□ 0.68
MBD4O95243 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
MBD4O95243 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC19.27■□□□□ 0.68
MBD4O95243 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.27■□□□□ 0.68
MBD4O95243 AC134407.2-201ENST00000625089 1978 ntBASIC19.27■□□□□ 0.68
MBD4O95243 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.27■□□□□ 0.68
MBD4O95243 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 AC236430.1-201ENST00000402231 743 ntBASIC19.27■□□□□ 0.68
MBD4O95243 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.27■□□□□ 0.68
MBD4O95243 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.27■□□□□ 0.68
MBD4O95243 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 AC243562.2-201ENST00000561247 970 ntBASIC19.27■□□□□ 0.68
MBD4O95243 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.27■□□□□ 0.68
MBD4O95243 MIR3197-201ENST00000582241 73 ntBASIC19.27■□□□□ 0.68
MBD4O95243 RN7SL204P-201ENST00000582831 262 ntBASIC19.27■□□□□ 0.68
MBD4O95243 AL033527.5-202ENST00000641632 1098 ntBASIC19.27■□□□□ 0.68
MBD4O95243 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
MBD4O95243 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MBD4O95243 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MBD4O95243 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MBD4O95243 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MBD4O95243 BNIP3P1-202ENST00000550043 1585 ntBASIC19.27■□□□□ 0.67
MBD4O95243 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.27■□□□□ 0.67
MBD4O95243 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
MBD4O95243 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.27■□□□□ 0.67
MBD4O95243 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.26■□□□□ 0.67
MBD4O95243 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.26■□□□□ 0.67
MBD4O95243 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.26■□□□□ 0.67
MBD4O95243 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MBD4O95243 AC004987.2-201ENST00000395959 1148 ntBASIC19.26■□□□□ 0.67
MBD4O95243 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.26■□□□□ 0.67
MBD4O95243 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms