Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RTN3O95197 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.13■□□□□ 0.33
RTN3O95197 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN3O95197 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.13■□□□□ 0.33
RTN3O95197 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RTN3O95197 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.12■□□□□ 0.33
RTN3O95197 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.12■□□□□ 0.33
RTN3O95197 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.12■□□□□ 0.33
RTN3O95197 AC105021.1-202ENST00000570572 669 ntBASIC17.12■□□□□ 0.33
RTN3O95197 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.12■□□□□ 0.33
RTN3O95197 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.12■□□□□ 0.33
RTN3O95197 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
RTN3O95197 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.12■□□□□ 0.33
RTN3O95197 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
RTN3O95197 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN3O95197 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
RTN3O95197 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.11■□□□□ 0.33
RTN3O95197 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 BCRP1-201ENST00000444246 691 ntBASIC17.11■□□□□ 0.33
RTN3O95197 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.11■□□□□ 0.33
RTN3O95197 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.11■□□□□ 0.33
RTN3O95197 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.11■□□□□ 0.33
RTN3O95197 AC026979.3-201ENST00000607315 403 ntBASIC17.11■□□□□ 0.33
RTN3O95197 RN7SL828P-201ENST00000607615 303 ntBASIC17.11■□□□□ 0.33
RTN3O95197 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN3O95197 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN3O95197 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN3O95197 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms