Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
NPHP1O15259 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.4■□□□□ 0.86
NPHP1O15259 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NPHP1O15259 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 TIMM17BP1-201ENST00000545713 516 ntBASIC20.4■□□□□ 0.86
NPHP1O15259 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NPHP1O15259 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.4■□□□□ 0.86
NPHP1O15259 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP1O15259 CTBP2P3-201ENST00000585629 1255 ntBASIC20.4■□□□□ 0.86
NPHP1O15259 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP1O15259 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
NPHP1O15259 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP1O15259 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP1O15259 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP1O15259 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.86
NPHP1O15259 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
NPHP1O15259 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP1O15259 PRORSD1P-202ENST00000563365 2154 ntBASIC20.39■□□□□ 0.86
NPHP1O15259 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP1O15259 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.39■□□□□ 0.86
NPHP1O15259 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
NPHP1O15259 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP1O15259 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP1O15259 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NPHP1O15259 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.39■□□□□ 0.86
NPHP1O15259 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
NPHP1O15259 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NPHP1O15259 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 AC022210.1-201ENST00000449856 793 ntBASIC20.39■□□□□ 0.85
NPHP1O15259 AL589987.1-201ENST00000453380 819 ntBASIC20.39■□□□□ 0.85
NPHP1O15259 ELK1P1-201ENST00000485699 580 ntBASIC20.39■□□□□ 0.85
NPHP1O15259 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.39■□□□□ 0.85
NPHP1O15259 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
NPHP1O15259 AC093726.1-201ENST00000608064 963 ntBASIC20.39■□□□□ 0.85
NPHP1O15259 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
NPHP1O15259 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NPHP1O15259 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
NPHP1O15259 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.85
NPHP1O15259 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NPHP1O15259 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP1O15259 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
NPHP1O15259 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP1O15259 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
NPHP1O15259 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.38■□□□□ 0.85
NPHP1O15259 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.38■□□□□ 0.85
NPHP1O15259 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.38■□□□□ 0.85
NPHP1O15259 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
NPHP1O15259 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms