Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 RNA5SP410-201ENST00000516285 106 ntBASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 Z92544.3-201ENST00000624747 417 ntBASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 AC103702.1-201ENST00000548801 2630 ntBASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM39Q9HCM9 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 AC005052.1-201ENST00000625181 2492 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 AC008677.1-201ENST00000519230 1561 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 CNN2P2-201ENST00000443536 909 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 CNN2P3-201ENST00000450201 906 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 AL365330.1-201ENST00000607459 531 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 AL136317.3-201ENST00000618497 906 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 AC008741.2-201ENST00000612792 3115 ntBASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM39Q9HCM9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM39Q9HCM9 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms