Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.34
PAAF1Q9BRP4 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PAAF1Q9BRP4 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
PAAF1Q9BRP4 CU639417.3-201ENST00000624240 1404 ntBASIC17.21■□□□□ 0.34
PAAF1Q9BRP4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
PAAF1Q9BRP4 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 AL391825.1-201ENST00000457671 1364 ntBASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 AC092337.1-201ENST00000568699 1129 ntBASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 LINC01115-203ENST00000606068 577 ntBASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PAAF1Q9BRP4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC134407.2-201ENST00000625089 1978 ntBASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC087499.6-201ENST00000411576 835 ntBASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 EEF1DP4-201ENST00000446006 880 ntBASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC055876.2-201ENST00000531834 546 ntBASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 IGHV3-72-202ENST00000621503 303 ntBASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 KRT8P37-201ENST00000451609 1420 ntBASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PAAF1Q9BRP4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 PCDH8P1-201ENST00000428983 2773 ntBASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 PCDHA14-201ENST00000506751 2298 ntBASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 AC244107.1-201ENST00000442033 332 ntBASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 AC245100.5-201ENST00000452108 331 ntBASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 INE1-201ENST00000456273 945 ntBASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.18■□□□□ 0.34
PAAF1Q9BRP4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms