Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC42Q96M95 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC42Q96M95 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 AC008677.1-201ENST00000519230 1561 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 RNPS1P1-201ENST00000507437 918 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 AC105339.3-201ENST00000560043 636 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 OR7E47P-204ENST00000575924 449 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 CLEC4GP1-201ENST00000596555 870 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 AC005593.1-201ENST00000624894 515 ntBASIC17.57■□□□□ 0.4
CCDC42Q96M95 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC42Q96M95 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC42Q96M95 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 AL031055.1-201ENST00000606362 631 ntBASIC17.56■□□□□ 0.4
CCDC42Q96M95 ACTL9-202ENST00000612068 1252 ntBASIC17.56■□□□□ 0.4
CCDC42Q96M95 AC004790.2-201ENST00000623588 572 ntBASIC17.56■□□□□ 0.4
CCDC42Q96M95 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC42Q96M95 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC42Q96M95 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms