Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 RPSAP36-202ENST00000494591 1261 ntBASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 FRMD8P1-201ENST00000440433 1524 ntBASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC19.1■□□□□ 0.65
SMC1BQ8NDV3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 MIR769-201ENST00000390225 118 ntBASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 AC234644.1-201ENST00000406065 370 ntBASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC1BQ8NDV3 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SMC1BQ8NDV3 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 HOMER2P2-201ENST00000451621 847 ntBASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AC090164.3-201ENST00000610780 2143 ntBASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 AL671710.1-201ENST00000610245 2349 ntBASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC1BQ8NDV3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms