Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC010336.2-201ENST00000564226 506 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 MIR6805-201ENST00000615055 62 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 AL391825.1-201ENST00000457671 1364 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 BTBD7P1-201ENST00000447253 1453 ntBASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 SPDYE17-201ENST00000412399 783 ntBASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 DFFBP1-201ENST00000433250 979 ntBASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AC044860.1-202ENST00000559481 777 ntBASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AL033527.5-202ENST00000641632 1098 ntBASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 AC099398.1-201ENST00000567919 2776 ntBASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDDC3Q8N4P3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 RPS2P32-201ENST00000439199 892 ntBASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 POU5F1P6-201ENST00000466990 990 ntBASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 ZNF890P-202ENST00000530367 1156 ntBASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 MIR4321-201ENST00000592276 80 ntBASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 AL162274.1-201ENST00000617191 1098 ntBASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HDDC3Q8N4P3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms