Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 AC010654.1-201ENST00000615722 808 ntBASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 AC117500.6-201ENST00000624871 588 ntBASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CCDC50Q8IVM0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 OR7E47P-204ENST00000575924 449 ntBASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC50Q8IVM0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 AC079781.3-201ENST00000449110 356 ntBASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 ACTL9-202ENST00000612068 1252 ntBASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 FAM215A-202ENST00000632077 792 ntBASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC50Q8IVM0 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms