Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 AP005117.1-202ENST00000581724 1908 ntBASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF549Q6P9A3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 AL355306.1-201ENST00000415580 579 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ADH5P3-201ENST00000433842 1137 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 FAM58CP-201ENST00000435741 640 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 KRT18P58-201ENST00000527480 1120 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 AC073389.1-201ENST00000595595 795 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 PMS2P7-201ENST00000506558 1336 ntBASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
ZNF549Q6P9A3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ZNF549Q6P9A3 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms