Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
LMO4P61968 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.24□□□□□ -0.29
LMO4P61968 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 AL512384.1-201ENST00000406683 331 ntBASIC13.24□□□□□ -0.29
LMO4P61968 U91328.1-201ENST00000437528 223 ntBASIC13.24□□□□□ -0.29
LMO4P61968 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 GIMAP3P-201ENST00000495150 836 ntBASIC13.24□□□□□ -0.29
LMO4P61968 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.24□□□□□ -0.29
LMO4P61968 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 RARRES2P5-201ENST00000564013 466 ntBASIC13.24□□□□□ -0.29
LMO4P61968 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.24□□□□□ -0.29
LMO4P61968 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 CTBP2P3-201ENST00000585629 1255 ntBASIC13.24□□□□□ -0.29
LMO4P61968 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.24□□□□□ -0.29
LMO4P61968 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
LMO4P61968 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LMO4P61968 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
LMO4P61968 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
LMO4P61968 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 AC011676.5-201ENST00000624864 2660 ntBASIC13.24□□□□□ -0.29
LMO4P61968 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.23□□□□□ -0.29
LMO4P61968 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 PKD1P1-201ENST00000458669 6805 ntBASIC13.23□□□□□ -0.29
LMO4P61968 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.23□□□□□ -0.29
LMO4P61968 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
LMO4P61968 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
LMO4P61968 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
LMO4P61968 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.23□□□□□ -0.29
LMO4P61968 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.23□□□□□ -0.29
LMO4P61968 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.23□□□□□ -0.29
LMO4P61968 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.23□□□□□ -0.29
LMO4P61968 AC132938.2-201ENST00000579188 680 ntBASIC13.23□□□□□ -0.29
LMO4P61968 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.23□□□□□ -0.29
LMO4P61968 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 LINC01115-203ENST00000606068 577 ntBASIC13.23□□□□□ -0.29
LMO4P61968 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.23□□□□□ -0.29
LMO4P61968 AL591163.1-201ENST00000641757 987 ntBASIC13.23□□□□□ -0.29
LMO4P61968 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.23□□□□□ -0.29
LMO4P61968 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
LMO4P61968 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.23□□□□□ -0.29
LMO4P61968 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LMO4P61968 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LMO4P61968 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms