Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 AC009078.2-202ENST00000463353 338 ntBASIC15.74■□□□□ 0.11
FOXA1P55317 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.74■□□□□ 0.11
FOXA1P55317 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 KRT18P34-201ENST00000488218 1270 ntBASIC15.74■□□□□ 0.11
FOXA1P55317 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.74■□□□□ 0.11
FOXA1P55317 AC018845.2-201ENST00000568326 409 ntBASIC15.74■□□□□ 0.11
FOXA1P55317 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.74■□□□□ 0.11
FOXA1P55317 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA1P55317 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
FOXA1P55317 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA1P55317 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
FOXA1P55317 HLA-A-201ENST00000376802 1334 ntBASIC15.73■□□□□ 0.11
FOXA1P55317 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
FOXA1P55317 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.73■□□□□ 0.11
FOXA1P55317 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
FOXA1P55317 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 AC140658.5-201ENST00000438532 169 ntBASIC15.73■□□□□ 0.11
FOXA1P55317 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.73■□□□□ 0.11
FOXA1P55317 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.73■□□□□ 0.11
FOXA1P55317 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.73■□□□□ 0.11
FOXA1P55317 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.73■□□□□ 0.11
FOXA1P55317 AC023141.13-201ENST00000604991 943 ntBASIC15.73■□□□□ 0.11
FOXA1P55317 Z83851.2-201ENST00000609564 659 ntBASIC15.73■□□□□ 0.11
FOXA1P55317 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 AC025580.3-201ENST00000617932 1424 ntBASIC15.73■□□□□ 0.11
FOXA1P55317 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
FOXA1P55317 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.73■□□□□ 0.11
FOXA1P55317 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
FOXA1P55317 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA1P55317 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA1P55317 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA1P55317 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA1P55317 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.72■□□□□ 0.11
FOXA1P55317 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA1P55317 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA1P55317 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA1P55317 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA1P55317 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms