Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 AP001282.1-201ENST00000531301 1499 ntBASIC17.13■□□□□ 0.33
LHX1P48742 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.13■□□□□ 0.33
LHX1P48742 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.13■□□□□ 0.33
LHX1P48742 MRPS18AP1-201ENST00000414458 589 ntBASIC17.13■□□□□ 0.33
LHX1P48742 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.13■□□□□ 0.33
LHX1P48742 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LHX1P48742 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.13■□□□□ 0.33
LHX1P48742 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.13■□□□□ 0.33
LHX1P48742 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.13■□□□□ 0.33
LHX1P48742 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LHX1P48742 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LHX1P48742 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
LHX1P48742 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LHX1P48742 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.12■□□□□ 0.33
LHX1P48742 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 MIR648-201ENST00000385046 94 ntBASIC17.12■□□□□ 0.33
LHX1P48742 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.12■□□□□ 0.33
LHX1P48742 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.12■□□□□ 0.33
LHX1P48742 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.12■□□□□ 0.33
LHX1P48742 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.12■□□□□ 0.33
LHX1P48742 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.12■□□□□ 0.33
LHX1P48742 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LHX1P48742 BTBD7P1-201ENST00000447253 1453 ntBASIC17.12■□□□□ 0.33
LHX1P48742 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LHX1P48742 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
LHX1P48742 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.11■□□□□ 0.33
LHX1P48742 MTHFR-217ENST00000641820 1569 ntBASIC17.11■□□□□ 0.33
LHX1P48742 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LHX1P48742 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.11■□□□□ 0.33
LHX1P48742 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.11■□□□□ 0.33
LHX1P48742 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
LHX1P48742 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LHX1P48742 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LHX1P48742 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.11■□□□□ 0.33
LHX1P48742 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms