Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AC093214.1-201ENST00000511688 1107 ntBASIC18.54■□□□□ 0.56
SMARCA1P28370 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AC010336.2-201ENST00000564226 506 ntBASIC18.54■□□□□ 0.56
SMARCA1P28370 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.54■□□□□ 0.56
SMARCA1P28370 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.54■□□□□ 0.56
SMARCA1P28370 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 AL390754.1-201ENST00000619088 582 ntBASIC18.54■□□□□ 0.56
SMARCA1P28370 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.54■□□□□ 0.56
SMARCA1P28370 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 CDC14C-201ENST00000428251 1719 ntBASIC18.54■□□□□ 0.56
SMARCA1P28370 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SMARCA1P28370 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SMARCA1P28370 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.53■□□□□ 0.56
SMARCA1P28370 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SMARCA1P28370 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.53■□□□□ 0.56
SMARCA1P28370 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.53■□□□□ 0.56
SMARCA1P28370 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.53■□□□□ 0.56
SMARCA1P28370 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.53■□□□□ 0.56
SMARCA1P28370 HMGN1P19-201ENST00000436976 333 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.53■□□□□ 0.56
SMARCA1P28370 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 PHKG1P2-201ENST00000457537 863 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.53■□□□□ 0.56
SMARCA1P28370 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 AL512361.1-201ENST00000554200 418 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.53■□□□□ 0.56
SMARCA1P28370 SPCS2P1-201ENST00000561636 679 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 AJ011932.1-201ENST00000621707 465 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.53■□□□□ 0.56
SMARCA1P28370 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SMARCA1P28370 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 AL603832.2-201ENST00000566195 2125 ntBASIC18.53■□□□□ 0.56
SMARCA1P28370 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.53■□□□□ 0.56
SMARCA1P28370 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMARCA1P28370 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 BTBD7P1-201ENST00000447253 1453 ntBASIC18.52■□□□□ 0.56
SMARCA1P28370 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SMARCA1P28370 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SMARCA1P28370 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.52■□□□□ 0.56
SMARCA1P28370 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.52■□□□□ 0.56
SMARCA1P28370 REXO1L1P-202ENST00000608646 1974 ntBASIC18.52■□□□□ 0.56
SMARCA1P28370 AC112504.1-201ENST00000623415 1841 ntBASIC18.52■□□□□ 0.56
SMARCA1P28370 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.52■□□□□ 0.56
SMARCA1P28370 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.52■□□□□ 0.56
SMARCA1P28370 RN7SL618P-201ENST00000477850 296 ntBASIC18.52■□□□□ 0.56
SMARCA1P28370 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.52■□□□□ 0.56
SMARCA1P28370 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.52■□□□□ 0.56
SMARCA1P28370 AC009407.1-201ENST00000568958 598 ntBASIC18.52■□□□□ 0.56
SMARCA1P28370 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.52■□□□□ 0.56
SMARCA1P28370 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.52■□□□□ 0.56
SMARCA1P28370 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.52■□□□□ 0.56
SMARCA1P28370 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.52■□□□□ 0.56
SMARCA1P28370 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMARCA1P28370 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms