Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 AC139713.2-201ENST00000641328 2723 ntBASIC14.16□□□□□ -0.14
COL8A1P27658 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.16□□□□□ -0.14
COL8A1P27658 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 KRT8P22-201ENST00000562317 1415 ntBASIC14.15□□□□□ -0.14
COL8A1P27658 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL8A1P27658 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.15□□□□□ -0.14
COL8A1P27658 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.15□□□□□ -0.14
COL8A1P27658 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.15□□□□□ -0.14
COL8A1P27658 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.15□□□□□ -0.14
COL8A1P27658 RRP7BP-205ENST00000566851 833 ntBASIC14.15□□□□□ -0.14
COL8A1P27658 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.15□□□□□ -0.14
COL8A1P27658 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.15□□□□□ -0.14
COL8A1P27658 MIR6069-201ENST00000620069 79 ntBASIC14.15□□□□□ -0.14
COL8A1P27658 CU634019.7-201ENST00000624153 1185 ntBASIC14.15□□□□□ -0.14
COL8A1P27658 FP236241.2-201ENST00000624906 1185 ntBASIC14.15□□□□□ -0.14
COL8A1P27658 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 AC134043.2-201ENST00000624206 2238 ntBASIC14.15□□□□□ -0.14
COL8A1P27658 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL8A1P27658 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.15□□□□□ -0.14
COL8A1P27658 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL8A1P27658 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
COL8A1P27658 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
COL8A1P27658 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
COL8A1P27658 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.14□□□□□ -0.15
COL8A1P27658 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
COL8A1P27658 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.14□□□□□ -0.15
COL8A1P27658 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 AC006033.1-201ENST00000440505 426 ntBASIC14.14□□□□□ -0.15
COL8A1P27658 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.14□□□□□ -0.15
COL8A1P27658 SERPINA7P1-201ENST00000443077 631 ntBASIC14.14□□□□□ -0.15
COL8A1P27658 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.14□□□□□ -0.15
COL8A1P27658 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.14□□□□□ -0.15
COL8A1P27658 AC098799.1-201ENST00000504752 800 ntBASIC14.14□□□□□ -0.15
COL8A1P27658 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 RARRES2P5-201ENST00000564013 466 ntBASIC14.14□□□□□ -0.15
COL8A1P27658 RN7SL560P-201ENST00000577943 264 ntBASIC14.14□□□□□ -0.15
COL8A1P27658 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.14□□□□□ -0.15
COL8A1P27658 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.14□□□□□ -0.15
COL8A1P27658 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.14□□□□□ -0.15
COL8A1P27658 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms