Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.33■□□□□ 0.05
COL5A1P20908 AC005252.2-201ENST00000624630 1141 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL5A1P20908 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL5A1P20908 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.33■□□□□ 0.05
COL5A1P20908 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.33■□□□□ 0.05
COL5A1P20908 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL5A1P20908 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL5A1P20908 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL5A1P20908 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.33■□□□□ 0.04
COL5A1P20908 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.33■□□□□ 0.04
COL5A1P20908 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL5A1P20908 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.33■□□□□ 0.04
COL5A1P20908 AC016694.1-201ENST00000434179 700 ntBASIC15.33■□□□□ 0.04
COL5A1P20908 AC022137.2-201ENST00000503482 481 ntBASIC15.33■□□□□ 0.04
COL5A1P20908 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.33■□□□□ 0.04
COL5A1P20908 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.33■□□□□ 0.04
COL5A1P20908 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.33■□□□□ 0.04
COL5A1P20908 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.33■□□□□ 0.04
COL5A1P20908 RN7SL560P-201ENST00000577943 264 ntBASIC15.33■□□□□ 0.04
COL5A1P20908 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.33■□□□□ 0.04
COL5A1P20908 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL5A1P20908 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.33■□□□□ 0.04
COL5A1P20908 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.33■□□□□ 0.04
COL5A1P20908 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL5A1P20908 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
COL5A1P20908 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.32■□□□□ 0.04
COL5A1P20908 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 YBX1P6-201ENST00000442962 1002 ntBASIC15.32■□□□□ 0.04
COL5A1P20908 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.32■□□□□ 0.04
COL5A1P20908 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.32■□□□□ 0.04
COL5A1P20908 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.32■□□□□ 0.04
COL5A1P20908 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 HNRNPUP1-201ENST00000554987 333 ntBASIC15.32■□□□□ 0.04
COL5A1P20908 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 AC012313.1-201ENST00000593393 3059 ntBASIC15.32■□□□□ 0.04
COL5A1P20908 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL5A1P20908 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.32■□□□□ 0.04
COL5A1P20908 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.32■□□□□ 0.04
COL5A1P20908 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.32■□□□□ 0.04
COL5A1P20908 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL5A1P20908 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL5A1P20908 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 AC136604.1-201ENST00000418535 575 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.31■□□□□ 0.04
COL5A1P20908 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.31■□□□□ 0.04
COL5A1P20908 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.31■□□□□ 0.04
COL5A1P20908 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 AC103810.3-201ENST00000583567 96 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL5A1P20908 C1QBPP1-201ENST00000400117 770 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 HAUS4P1-201ENST00000406739 1145 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 CNN2P8-201ENST00000421872 913 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 AC006033.1-201ENST00000440505 426 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms