Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC025279.2-201ENST00000569730 653 ntBASIC16.5■□□□□ 0.23
VCANP13611 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.5■□□□□ 0.23
VCANP13611 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VCANP13611 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.5■□□□□ 0.23
VCANP13611 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.5■□□□□ 0.23
VCANP13611 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VCANP13611 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VCANP13611 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.5■□□□□ 0.23
VCANP13611 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.5■□□□□ 0.23
VCANP13611 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.5■□□□□ 0.23
VCANP13611 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.5■□□□□ 0.23
VCANP13611 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC16.5■□□□□ 0.23
VCANP13611 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.5■□□□□ 0.23
VCANP13611 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.5■□□□□ 0.23
VCANP13611 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 RPL13AP25-201ENST00000484130 612 ntBASIC16.49■□□□□ 0.23
VCANP13611 AC022217.1-201ENST00000521069 738 ntBASIC16.49■□□□□ 0.23
VCANP13611 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.49■□□□□ 0.23
VCANP13611 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.49■□□□□ 0.23
VCANP13611 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 AL139327.4-201ENST00000612362 153 ntBASIC16.49■□□□□ 0.23
VCANP13611 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.49■□□□□ 0.23
VCANP13611 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.49■□□□□ 0.23
VCANP13611 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.49■□□□□ 0.23
VCANP13611 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 AGPAT5P1-201ENST00000455855 1019 ntBASIC16.49■□□□□ 0.23
VCANP13611 AC022137.2-201ENST00000503482 481 ntBASIC16.49■□□□□ 0.23
VCANP13611 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.49■□□□□ 0.23
VCANP13611 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 AC026979.3-201ENST00000607315 403 ntBASIC16.49■□□□□ 0.23
VCANP13611 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.49■□□□□ 0.23
VCANP13611 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 DDX39AP1-201ENST00000445147 1181 ntBASIC16.49■□□□□ 0.23
VCANP13611 HOMER2P2-201ENST00000451621 847 ntBASIC16.49■□□□□ 0.23
VCANP13611 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCANP13611 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.49■□□□□ 0.23
VCANP13611 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.49■□□□□ 0.23
VCANP13611 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VCANP13611 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.48■□□□□ 0.23
VCANP13611 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VCANP13611 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VCANP13611 FRMD8P1-201ENST00000440433 1524 ntBASIC16.48■□□□□ 0.23
VCANP13611 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 AP001063.1-201ENST00000568332 529 ntBASIC16.48■□□□□ 0.23
VCANP13611 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.48■□□□□ 0.23
VCANP13611 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VCANP13611 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.48■□□□□ 0.23
VCANP13611 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
VCANP13611 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCANP13611 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.47■□□□□ 0.23
VCANP13611 ALG1L13P-202ENST00000519320 584 ntBASIC16.47■□□□□ 0.23
VCANP13611 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.47■□□□□ 0.23
VCANP13611 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.47■□□□□ 0.23
VCANP13611 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VCANP13611 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms