Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A1P12109 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL6A1P12109 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A1P12109 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.75■□□□□ 0.43
COL6A1P12109 EEF1DP4-201ENST00000446006 880 ntBASIC17.75■□□□□ 0.43
COL6A1P12109 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 AC106760.1-201ENST00000508690 800 ntBASIC17.75■□□□□ 0.43
COL6A1P12109 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A1P12109 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A1P12109 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.75■□□□□ 0.43
COL6A1P12109 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
COL6A1P12109 AL022328.3-201ENST00000607943 679 ntBASIC17.75■□□□□ 0.43
COL6A1P12109 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.75■□□□□ 0.43
COL6A1P12109 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.75■□□□□ 0.43
COL6A1P12109 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.75■□□□□ 0.43
COL6A1P12109 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A1P12109 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A1P12109 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL6A1P12109 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 AC134312.5-201ENST00000568031 1313 ntBASIC17.74■□□□□ 0.43
COL6A1P12109 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A1P12109 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.74■□□□□ 0.43
COL6A1P12109 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 AL049840.4-201ENST00000602422 811 ntBASIC17.74■□□□□ 0.43
COL6A1P12109 AL365330.1-201ENST00000607459 531 ntBASIC17.74■□□□□ 0.43
COL6A1P12109 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A1P12109 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A1P12109 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A1P12109 AL607033.1-201ENST00000623900 1599 ntBASIC17.74■□□□□ 0.43
COL6A1P12109 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A1P12109 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A1P12109 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 GGT4P-201ENST00000623672 1708 ntBASIC17.73■□□□□ 0.43
COL6A1P12109 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 MIR663B-201ENST00000408361 115 ntBASIC17.73■□□□□ 0.43
COL6A1P12109 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A1P12109 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A1P12109 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A1P12109 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
COL6A1P12109 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A1P12109 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL6A1P12109 AC120045.2-201ENST00000567334 178 ntBASIC17.73■□□□□ 0.43
COL6A1P12109 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.73■□□□□ 0.43
COL6A1P12109 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A1P12109 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
COL6A1P12109 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A1P12109 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
COL6A1P12109 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A1P12109 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A1P12109 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms